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  1. Article ; Online: A general method for locating stationary points on the mixed-spin surface of spin-forbidden reaction with multiple spin states.

    Zhao, Long / Zou, Wenli

    The Journal of chemical physics

    2023  Volume 158, Issue 22

    Abstract: Some chemical reactions proceed on multiple potential energy surfaces and are often accompanied by a change in spin multiplicity, being called spin-forbidden reactions, where the spin-orbit coupling (SOC) effects play a crucial role. In order to ... ...

    Abstract Some chemical reactions proceed on multiple potential energy surfaces and are often accompanied by a change in spin multiplicity, being called spin-forbidden reactions, where the spin-orbit coupling (SOC) effects play a crucial role. In order to efficiently investigate spin-forbidden reactions with two spin states, Yang et al. [Phys. Chem. Chem. Phys. 20, 4129-4136 (2018)] proposed a two-state spin-mixing (TSSM) model, where the SOC effects between the two spin states are simulated by a geometry-independent constant. Inspired by the TSSM model, we suggest a multiple-state spin-mixing (MSSM) model in this paper for the general case with any number of spin states, and its analytic first and second derivatives have been developed for locating stationary points on the mixed-spin potential energy surface and estimating thermochemical energies. To demonstrate the performance of the MSSM model, some spin-forbidden reactions involving 5d transition elements are calculated using the density functional theory (DFT), and the results are compared with the two-component relativistic ones. It is found that MSSM DFT and two-component DFT calculations may provide very similar stationary-point information on the lowest mixed-spin/spinor energy surface, including structures, vibrational frequencies, and zero-point energies. For the reactions containing saturated 5d elements, the reaction energies by MSSM DFT and two-component DFT agree very well within 3 kcal/mol. As for the two reactions OsO+ + CH4 → OOs(CH2)+ + H2 and W + CH4 → WCH2 + H2 involving unsaturated 5d elements, MSSM DFT may also yield good reaction energies of similar accuracy but with some counterexamples. Nevertheless, the energies may be remarkably improved by a posteriori single point energy calculations using two-component DFT at the MSSM DFT optimized geometries, and the maximum error of about 1 kcal/mol is almost independent of the SOC constant used. The MSSM method as well as the developed computer program provides an effective utility for studying spin-forbidden reactions.
    MeSH term(s) Chemical Phenomena ; Thermodynamics
    Language English
    Publishing date 2023-06-08
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3113-6
    ISSN 1089-7690 ; 0021-9606
    ISSN (online) 1089-7690
    ISSN 0021-9606
    DOI 10.1063/5.0151630
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Optical spectroscopy of the previously unobserved palladium monosulfide (PdS) radical.

    Zhang, Lei / Zou, Wenli / Yu, Yao / Yang, Jie

    The Journal of chemical physics

    2023  Volume 159, Issue 20

    Abstract: The optical spectra of the palladium monosulfide (PdS) molecule in gas phase have been investigated for the first time through laser-induced fluorescence (LIF) and single-vibronic-level (SVL) emission spectroscopies. The I3Σ- - X3Σ- transition system ... ...

    Abstract The optical spectra of the palladium monosulfide (PdS) molecule in gas phase have been investigated for the first time through laser-induced fluorescence (LIF) and single-vibronic-level (SVL) emission spectroscopies. The I3Σ- - X3Σ- transition system containing 16 vibronic bands was identified in the LIF spectra, covering the energy range of 22 030-23 400 cm-1. The spectra with rotational resolution allowed for the determination of the molecular constants in both the ground X and excited I electronic states, involving the spin-orbit splitting, rotational constant, vibrational frequency, and isotope shift. Isotopically resolved SVL emission spectra permitted the observation of the spin-orbit splitting, vibrational frequency, and vibrational isotope shift of the X3Σ-0+,1 and A3Π2,1,0-,0+ states as they transitioned from the excited I state to the vibrational levels of the X and A states. Ab initio calculations presented plenty of the Λ-S and Ω states of PdS below 28 000 cm-1 and provided strong support for the assignments of the experimental observation.
    Language English
    Publishing date 2023-11-27
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3113-6
    ISSN 1089-7690 ; 0021-9606
    ISSN (online) 1089-7690
    ISSN 0021-9606
    DOI 10.1063/5.0179596
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Stable copernicium hexafluoride (CnF

    Hu, Shu-Xian / Zou, Wenli

    Physical chemistry chemical physics : PCCP

    2021  Volume 24, Issue 1, Page(s) 321–325

    Abstract: As the heaviest group 12 element known currently, copernicium (Cn) often presents the oxidation states of I+, II+, and rarely IV+ as in its homologue mercury. In this work we systematically studied the stability of some oxides, fluorides, and ... ...

    Abstract As the heaviest group 12 element known currently, copernicium (Cn) often presents the oxidation states of I+, II+, and rarely IV+ as in its homologue mercury. In this work we systematically studied the stability of some oxides, fluorides, and oxyfluorides of Cn by two-component relativistic calculations and found that the CnF
    Language English
    Publishing date 2021-12-22
    Publishing country England
    Document type Journal Article
    ZDB-ID 1476244-4
    ISSN 1463-9084 ; 1463-9076
    ISSN (online) 1463-9084
    ISSN 1463-9076
    DOI 10.1039/d1cp04360a
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: GUGA-based MRCI approach with core-valence separation approximation (CVS) for the calculation of the core-excited states of molecules.

    Song, Qi / Liu, Baoyuan / Wu, Junfeng / Zou, Wenli / Wang, Yubin / Suo, Bingbing / Lei, Yibo

    The Journal of chemical physics

    2024  Volume 160, Issue 9

    Abstract: We develop and demonstrate how to use the Graphical Unitary Group Approach (GUGA)-based MRCISD with Core-Valence Separation (CVS) approximation to compute the core-excited states. First, perform a normal Self-Consistent-Field (SCF) or valence MCSCF ... ...

    Abstract We develop and demonstrate how to use the Graphical Unitary Group Approach (GUGA)-based MRCISD with Core-Valence Separation (CVS) approximation to compute the core-excited states. First, perform a normal Self-Consistent-Field (SCF) or valence MCSCF calculation to optimize the molecular orbitals. Second, rotate the optimized target core orbitals and append to the active space, form an extended CVS active space, and perform a CVS-MCSCF calculation for core-excited states. Finally, construct the CVS-MRCISD expansion space and perform a CVS-MRCISD calculation to optimize the CI coefficients based on the variational method. The CVS approximation with GUGA-based methods can be implemented by flexible truncation of the Distinct Row Table. Eliminating the valence-excited configurations from the CVS-MRCISD expansion space can prevent variational collapse in the Davidson iteration diagonalization. The accuracy of the CVS-MRCISD scheme was investigated for excitation energies and compared with that of the CVS-MCSCF and CVS-CASPT2 methods using the same active space. The results show that CVS-MRCISD is capable of reproducing well-matched vertical core excitation energies that are consistent with experiments by combining large basis sets and a rational reference space. The calculation results also highlight the fact that the dynamic correlation between electrons makes an undeniable contribution in core-excited states.
    Language English
    Publishing date 2024-03-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3113-6
    ISSN 1089-7690 ; 0021-9606
    ISSN (online) 1089-7690
    ISSN 0021-9606
    DOI 10.1063/5.0189443
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Panax notoginseng saponins inhibits NLRP3 inflammasome-mediated pyroptosis by downregulating lncRNA-ANRIL in cardiorenal syndrome type 4.

    Xu, Ying / Cao, Luxi / Zou, Wenli / Yu, Rizhen / Shen, Wei

    Chinese medicine

    2023  Volume 18, Issue 1, Page(s) 50

    Abstract: Objective: Cardiorenal syndrome type 4 (CRS4) is a complication of chronic kidney disease. Panax notoginseng saponins (PNS) have been confirmed to be efficient in cardiovascular diseases. Our study aimed to explore the therapeutic role and mechanism of ... ...

    Abstract Objective: Cardiorenal syndrome type 4 (CRS4) is a complication of chronic kidney disease. Panax notoginseng saponins (PNS) have been confirmed to be efficient in cardiovascular diseases. Our study aimed to explore the therapeutic role and mechanism of PNS in CRS4.
    Methods: CRS4 model rats and hypoxia-induced cardiomyocytes were treated with PNS, with and without pyroptosis inhibitor VX765 and ANRIL overexpression plasmids. Cardiac function and cardiorenal function biomarkers levels were measured by echocardiography and ELISA, respectively. Cardiac fibrosis was detected by Masson staining. Cell viability was determined by cell counting kit-8 and flow cytometry. Expression of fibrosis-related genes (COL-I, COL-III, TGF-β, α-SMA) and ANRIL was examined using RT-qPCR. Pyroptosis-related protein levels of NLRP3, ASC, IL-1β, TGF-β1, GSDMD-N, and caspase-1 were measured by western blotting or immunofluorescence staining.
    Results: PNS improved cardiac function, and inhibited cardiac fibrosis and pyroptosis in a dose-dependent manner in model rats and injured H9c2 cells (p < 0.01). The expression of fibrosis-related genes (COL-I, COL-III, TGF-β, α-SMA) and pyroptosis-related proteins (NLRP3, ASC, IL-1β, TGF-β1, GSDMD-N, and caspase-1) was inhibited by PNS in injured cardiac tissues and cells (p < 0.01). Additionally, ANRIL was upregulated in model rats and injured cells, but PNS reduced its expression in a dose-dependent manner (p < 0.05). Additionally, the inhibitory effect of PNS on pyroptosis in injured H9c2 cells was enhanced by VX765 and reversed by ANRIL overexpression, respectively (p < 0.05).
    Conclusion: PNS inhibits pyroptosis by downregulating lncRNA-ANRIL in CRS4.
    Language English
    Publishing date 2023-05-08
    Publishing country England
    Document type Journal Article
    ZDB-ID 2260322-0
    ISSN 1749-8546
    ISSN 1749-8546
    DOI 10.1186/s13020-023-00756-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: The Case | Acute kidney injury and a facial lesion.

    Huang, Yicheng / Zhu, Xiaodong / Zou, Wenli / Liu, Yueming

    Kidney international

    2022  Volume 102, Issue 6, Page(s) 1435–1436

    MeSH term(s) Humans ; Acute Kidney Injury/diagnosis ; Acute Kidney Injury/etiology ; Acute Kidney Injury/therapy
    Language English
    Publishing date 2022-10-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 120573-0
    ISSN 1523-1755 ; 0085-2538
    ISSN (online) 1523-1755
    ISSN 0085-2538
    DOI 10.1016/j.kint.2022.07.014
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: New Light on an Old Story: Breaking Kasha's Rule in Phosphorescence Mechanism of Organic Boron Compounds and Molecule Design.

    Deng, Dan / Suo, Bingbing / Zou, Wenli

    International journal of molecular sciences

    2022  Volume 23, Issue 2

    Abstract: In this work, the phosphorescence mechanism of (E)-3-(((4-nitrophenyl)imino)methyl)-2H-thiochroman-4-olate-BF2 compound (S-BF2) is investigated theoretically. The phosphorescence of S-BF2 has been reassigned to the second triplet state (T2) by the ... ...

    Abstract In this work, the phosphorescence mechanism of (E)-3-(((4-nitrophenyl)imino)methyl)-2H-thiochroman-4-olate-BF2 compound (S-BF2) is investigated theoretically. The phosphorescence of S-BF2 has been reassigned to the second triplet state (T2) by the density matrix renormalization group (DMRG) method combined with the multi-configurational pair density functional theory (MCPDFT) to approach the limit of theoretical accuracy. The calculated radiative and non-radiative rate constants support the breakdown of Kasha's rule further. Our conclusion contradicts previous reports that phosphorescence comes from the first triplet state (T1). Based on the revised phosphorescence mechanism, we have purposefully designed some novel compounds in theory to enhance the phosphorescence efficiency from T2 by replacing substitute groups in S-BF2. Overall, both S-BF2 and newly designed high-efficiency molecules exhibit anti-Kasha T2 phosphorescence instead of the conventional T1 emission. This work provides a useful guidance for future design of high-efficiency green-emitting phosphors.
    MeSH term(s) Algorithms ; Boron Compounds/chemistry ; Density Functional Theory ; Models, Chemical ; Models, Molecular ; Models, Theoretical ; Molecular Conformation ; Molecular Structure ; Organic Chemicals/chemistry ; Quantum Theory
    Chemical Substances Boron Compounds ; Organic Chemicals
    Language English
    Publishing date 2022-01-14
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms23020876
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  8. Article ; Online: LModeA-nano: A PyMOL Plugin for Calculating Bond Strength in Solids, Surfaces, and Molecules via Local Vibrational Mode Analysis.

    Tao, Yunwen / Zou, Wenli / Nanayakkara, Sadisha / Kraka, Elfi

    Journal of chemical theory and computation

    2022  Volume 18, Issue 3, Page(s) 1821–1837

    Abstract: The analysis of chemical bonding in crystal structures and surfaces is an important research topic in theoretical chemistry. In this work, we present a PyMOL plugin, named LModeA-nano, as implementation of the local vibrational mode theory for periodic ... ...

    Abstract The analysis of chemical bonding in crystal structures and surfaces is an important research topic in theoretical chemistry. In this work, we present a PyMOL plugin, named LModeA-nano, as implementation of the local vibrational mode theory for periodic systems (Tao et al.
    Language English
    Publishing date 2022-02-22
    Publishing country United States
    Document type Journal Article
    ISSN 1549-9626
    ISSN (online) 1549-9626
    DOI 10.1021/acs.jctc.1c01269
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: High-Level Theoretical Study of the C

    Fu, Yingxiang / Niu, Yue / Liang, Ximin / Liu, Haitao / Zou, Wenli

    The journal of physical chemistry. A

    2022  Volume 126, Issue 33, Page(s) 5565–5573

    Abstract: For the first singlet excited states ... ...

    Abstract For the first singlet excited states C
    Language English
    Publishing date 2022-08-10
    Publishing country United States
    Document type Journal Article
    ISSN 1520-5215
    ISSN (online) 1520-5215
    DOI 10.1021/acs.jpca.2c04240
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Programmable RNA N

    Shi, Chuanlin / Zou, Wenli / Liu, Xiangpei / Zhang, Hong / Li, Xiaofang / Fu, Guiling / Fei, Qili / Qian, Qian / Shang, Lianguang

    Plant biotechnology journal

    2024  

    Abstract: ... ...

    Abstract N
    Language English
    Publishing date 2024-02-16
    Publishing country England
    Document type Journal Article
    ZDB-ID 2136367-5
    ISSN 1467-7652 ; 1467-7652
    ISSN (online) 1467-7652
    ISSN 1467-7652
    DOI 10.1111/pbi.14307
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