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Book: Plant photomorphogenesis

Zuo, Kaijing / Yin, Ruohe / Li, Ling

methods and protocols

(Methods in molecular biology ; 2297 ; Springer protocols)

2021

Author's details	edited by Ruohe Yin, Ling Li, Kaijing Zuo
Series title	Methods in molecular biology ; 2297 Springer protocols
Collection
Language	English
Size	XI, 176 Seiten, Illustrationen, Diagramme
Publisher	Humana Press
Publishing place	New York, NY
Publishing country	United States
Document type	Book
HBZ-ID	HT020874936
ISBN	978-1-0716-1369-6 ; 9781071613702 ; 1-0716-1369-3 ; 1071613707
Database	Catalogue ZB MED Medicine, Health

In stock of ZB MED Cologne/Königswinter

Shelf mark	Loan status	Location
Zs A 7042 -2297-	verfügbar in Königswinter	Königswinter

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Article ; Online: The Verticillium dahliae effector VdPHB1 promotes pathogenicity in cotton and interacts with the immune protein GhMC4.

Song, Qingwei / Han, Song / Hu, Shi / Xu, Yiyang / Zuo, Kaijing

Plant & cell physiology

2024

Abstract: Verticillium dahliae is a kind of pathogenic fungus that brings about wilt disease and great losses in cotton. The molecular mechanism of the effectors in V. dahliae regulating cotton immunity remains largely unknown. Here we identified an effector of V. ...

Abstract	Verticillium dahliae is a kind of pathogenic fungus that brings about wilt disease and great losses in cotton. The molecular mechanism of the effectors in V. dahliae regulating cotton immunity remains largely unknown. Here we identified an effector of V. dahliae, VdPHB1, whose gene expression is highly induced by infection. VdPHB1 protein is localized in the intercellular space of cotton plants. Knockout VdPHB1 gene in V. dahliae had no effect on pathogen growth, but decreased the virulence in cotton. VdPHB1 ectopically expressed Arabidopsis plants were growth-inhibited and significantly susceptible to V. dahliae. Further, VdPHB1 interacted with the type II metacaspase GhMC4. GhMC4 gene silenced cotton plants were more sensitive to V. dahliae with reduced expressions of pathogen defense-related and programmed cell death genes. The accumulation of GhMC4 protein were concurrently repressed when VdPHB1 protein expressed during infection. In summary, these results revealed a novel molecular mechanism of virulence regulation that the secreted effector VdPHB1 represses the activity of cysteine protease for helping V. dahliae infection in cotton.
Language	English
Publishing date	2024-04-15
Publishing country	Japan
Document type	Journal Article
ZDB-ID	208907-5
ISSN	1471-9053 ; 0032-0781
ISSN (online)	1471-9053
ISSN	0032-0781
DOI	10.1093/pcp/pcae043
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Article ; Online: Arabidopsis calcium-dependent protein kinase CPK6 regulates drought tolerance under high nitrogen by the phosphorylation of NRT1.1.

Ma, Qijun / Zhao, Chunyan / Hu, Shi / Zuo, Kaijing

Journal of experimental botany

2023 Volume 74, Issue 18, Page(s) 5682–5693

Abstract: Nitrogen (N) is an essential macronutrient for plant growth and development, and its availability is regulated to some extent by drought stress. Calcium-dependent protein kinases (CPKs) are a unique family of Ca2+ sensors with diverse functions in N ... ...

Abstract	Nitrogen (N) is an essential macronutrient for plant growth and development, and its availability is regulated to some extent by drought stress. Calcium-dependent protein kinases (CPKs) are a unique family of Ca2+ sensors with diverse functions in N uptake and drought-tolerance signaling pathways; however, how CPKs are involved in the crosstalk between drought stress and N transportation remains largely unknown. Here, we identify the drought-tolerance function of Arabidopsis CPK6 under high N conditions. CPK6 expression was induced by ABA and drought treatments. The mutant cpk6 was insensitive to ABA treatment and low N, but was sensitive to drought only under high N conditions. CPK6 interacted with the NRT1.1 (CHL1) protein and phosphorylated the Thr447 residue, which then repressed the NO3- transporting activity of Arabidopsis under high N and drought stress. Taken together, our results show that CPK6 regulates Arabidopsis drought tolerance through changing the phosphorylation state of NRT1.1, and improve our knowledge of N uptake in plants during drought stress.
MeSH term(s)	Abscisic Acid/metabolism ; Anion Transport Proteins/metabolism ; Arabidopsis/metabolism ; Arabidopsis Proteins/genetics ; Arabidopsis Proteins/metabolism ; Drought Resistance ; Droughts ; Gene Expression Regulation, Plant ; Nitrogen/metabolism ; Phosphorylation ; Plant Proteins/metabolism ; Protein Kinases/genetics ; Protein Kinases/metabolism ; Stress, Physiological
Chemical Substances	Abscisic Acid (72S9A8J5GW) ; Anion Transport Proteins ; Arabidopsis Proteins ; calcium-dependent protein kinase (EC 2.7.1.-) ; Nitrogen (N762921K75) ; NRT1.1 protein, Arabidopsis ; Plant Proteins ; Protein Kinases (EC 2.7.-) ; CPK6 protein, Arabidopsis (EC 2.7.11.17)
Language	English
Publishing date	2023-07-17
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2976-2
ISSN	1460-2431 ; 0022-0957
ISSN (online)	1460-2431
ISSN	0022-0957
DOI	10.1093/jxb/erad277
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Article ; Online: Designing artificial synthetic promoters for accurate, smart, and versatile gene expression in plants.

Yasmeen, Erum / Wang, Jin / Riaz, Muhammad / Zhang, Lida / Zuo, Kaijing

Plant communications

2023 Volume 4, Issue 4, Page(s) 100558

Abstract: With the development of high-throughput biology techniques and artificial intelligence, it has become increasingly feasible to design and construct artificial biological parts, modules, circuits, and even whole systems. To overcome the limitations of ... ...

Abstract	With the development of high-throughput biology techniques and artificial intelligence, it has become increasingly feasible to design and construct artificial biological parts, modules, circuits, and even whole systems. To overcome the limitations of native promoters in controlling gene expression, artificial promoter design aims to synthesize short, inducible, and conditionally controlled promoters to coordinate the expression of multiple genes in diverse plant metabolic and signaling pathways. Synthetic promoters are versatile and can drive gene expression accurately with smart responses; they show potential for enhancing desirable traits in crops, thereby improving crop yield, nutritional quality, and food security. This review first illustrates the importance of synthetic promoters, then introduces promoter architecture and thoroughly summarizes advances in synthetic promoter construction. Restrictions to the development of synthetic promoters and future applications of such promoters in synthetic plant biology and crop improvement are also discussed.
MeSH term(s)	Artificial Intelligence ; Promoter Regions, Genetic ; Crops, Agricultural/genetics ; Synthetic Biology/methods ; Gene Expression
Language	English
Publishing date	2023-02-09
Publishing country	China
Document type	Journal Article ; Review ; Research Support, Non-U.S. Gov't
ISSN	2590-3462
ISSN (online)	2590-3462
DOI	10.1016/j.xplc.2023.100558
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Article: Genome-wide identification of nitrate transporter genes from

Lv, Mengli / Dong, Tiantian / Wang, Jin / Zuo, Kaijing

Frontiers in plant science

2022 Volume 13, Page(s) 945470

Abstract: Nitrate transporter ( ...

Abstract	Nitrate transporter (
Language	English
Publishing date	2022-08-18
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2613694-6
ISSN	1664-462X
ISSN	1664-462X
DOI	10.3389/fpls.2022.945470
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Article ; Online: Designing artificial synthetic promoters for accurate, smart, and versatile gene expression in plants

Yasmeen, Erum / Wang, Jin / Riaz, Muhammad / Zhang, Lida / Zuo, Kaijing

Plant Communications. 2023 Feb. 09, p.100558-

2023 , Page(s) 100558–

Abstract	With the development of high-throughput biology techniques and artificial intelligence, it has become increasingly feasible to design and construct artificial biological parts, modules, circuits, and even whole systems. To overcome the limitations of native promoters in controlling gene expression, artificial promoter design aims to synthesize short, inducible, and conditionally controlled promoters to coordinate the expression of multiple genes in diverse plant metabolic and signaling pathways. Synthetic promoters are versatile and can drive gene expression accurately with smart responses; they show potential for enhancing desirable traits in crops, thereby improving crop yield, nutritional quality, and food security. This review first illustrates the importance of synthetic promoters, then introduces promoter architecture and thoroughly summarizes advances in synthetic promoter construction. Restrictions to the development of synthetic promoters and future applications of such promoters in synthetic plant biology and crop improvement are also discussed.
Keywords	artificial intelligence ; crop yield ; food security ; gene expression ; nutritive value ; plant biology ; plants ; synthetic promoter ; cis element
Language	English
Dates of publication	2023-0209
Publishing place	Elsevier Inc.
Document type	Article ; Online
Note	Pre-press version ; Use and reproduction
ISSN	2590-3462
DOI	10.1016/j.xplc.2023.100558
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: GhXB38D represses cotton fibre elongation through ubiquitination of ethylene biosynthesis enzymes GhACS4 and GhACO1.

Song, Qingwei / Gao, Wanting / Du, Chuanhui / Sun, Wenjie / Wang, Jin / Zuo, Kaijing

Plant biotechnology journal

2023 Volume 21, Issue 11, Page(s) 2374–2388

Abstract: Ethylene plays an essential role in the development of cotton fibres. Ethylene biosynthesis in plants is elaborately regulated by the activities of key enzymes, 1-aminocyclopropane-1-carboxylate oxidase (ACO) and 1-aminocyclopropane-1-carboxylate ... ...

Abstract	Ethylene plays an essential role in the development of cotton fibres. Ethylene biosynthesis in plants is elaborately regulated by the activities of key enzymes, 1-aminocyclopropane-1-carboxylate oxidase (ACO) and 1-aminocyclopropane-1-carboxylate synthase (ACS); however, the potential mechanism of post-translational modification of ACO and ACS to control ethylene synthesis in cotton fibres remains unclear. Here, we identify an E3 ubiquitin ligase, GhXB38D, that regulates ethylene biosynthesis during fibre elongation in cotton. GhXB38D gene is highly expressed in cotton fibres during the rapid elongation stage. Suppressing GhXB38D expression in cotton significantly enhanced fibre elongation and length, accompanied by the up-regulation of genes associated with ethylene signalling and fibre elongation. We demonstrated that GhXB38D interacts with the ethylene biosynthesis enzymes GhACS4 and GhACO1 in elongating fibres and specifically mediates their ubiquitination and degradation. The inhibition of GhXB38D gene expression increased the stability of GhACS4 and GhACO1 proteins in cotton fibres and ovules, resulting in an elevated concentration of ethylene. Our findings highlight the role of GhXB38D as a regulator of ethylene synthesis by ubiquitinating ACS4 and ACO1 proteins and modulating their stability. GhXB38D acts as a negative regulator of fibre elongation and serves as a potential target for enhancing cotton fibre yield and quality through gene editing strategy.
MeSH term(s)	Cotton Fiber ; Ethylenes ; Ubiquitin-Protein Ligases/genetics ; Ubiquitination ; Gene Expression Regulation, Plant ; Gossypium/genetics
Chemical Substances	ethylene (91GW059KN7) ; Ethylenes ; Ubiquitin-Protein Ligases (EC 2.3.2.27)
Language	English
Publishing date	2023-08-19
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2136367-5
ISSN	1467-7652 ; 1467-7652
ISSN (online)	1467-7652
ISSN	1467-7652
DOI	10.1111/pbi.14138
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Cotton microtubule-associated protein GhMAP20L5 mediates fiber elongation through the interaction with the tubulin GhTUB13.

Song, Qingwei / Gao, Wanting / Du, Chuanhui / Wang, Jin / Zuo, Kaijing

Plant science : an international journal of experimental plant biology

2022 Volume 327, Page(s) 111545

Abstract: Targeting proteins for Xklp2 (TPX2s) comprise a class of MAPs that are essential for plant growth and development by regulating the dynamic changes of microtubules (MTs) and proper formation of cytoskeleton. However, the function of TPX2 proteins in ... ...

Abstract	Targeting proteins for Xklp2 (TPX2s) comprise a class of MAPs that are essential for plant growth and development by regulating the dynamic changes of microtubules (MTs) and proper formation of cytoskeleton. However, the function of TPX2 proteins in cotton fiber development remains poorly understood. Here, we identified the function of a fiber elongation-specific TPX2 protein, GhMAP20L5, in cotton. Suppressed GhMAP20L5 gene expression in cotton (GhMAP20L5i) significantly reduced fiber elongation rate, fiber length and lint percentage. GhMAP20L5i fibers had thinner and looser secondary cell walls (SCW), and incompact helix twists. GhMAP20L5 specifically interacted with the tubulin GhTUB13 on the cytoskeleton. Gene coexpression analysis showed that GhMAP20L5 involved in multiple pathways related to cytoskeleton establishment and fiber cell wall formation and affected cellulase genes expressions. In summary, our results revealed that GhMAP20L5 is important for fiber development by regulating cytoskeleton establishment and the cellulose deposition in cotton.
Language	English
Publishing date	2022-12-01
Publishing country	Ireland
Document type	Journal Article
ZDB-ID	742010-9
ISSN	1873-2259 ; 0168-9452
ISSN (online)	1873-2259
ISSN	0168-9452
DOI	10.1016/j.plantsci.2022.111545
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Article ; Online: A Novel Small RNA, DsrO, in Deinococcus radiodurans Promotes Methionine Sulfoxide Reductase (

Chen, Yun / Zhao, Mingming / Lv, Mengli / Lin, Min / Wang, Jin / Zuo, Kaijing

Applied and environmental microbiology

2022 Volume 88, Issue 11, Page(s) e0003822

Abstract: Reactive oxygen species (ROS) can cause destructive damage to biological macromolecules and protein dysfunction in bacteria. Methionine sulfoxide reductase (Msr) with redox-active Cys and/or seleno-cysteine (Sec) residues can restore physiological ... ...

Abstract	Reactive oxygen species (ROS) can cause destructive damage to biological macromolecules and protein dysfunction in bacteria. Methionine sulfoxide reductase (Msr) with redox-active Cys and/or seleno-cysteine (Sec) residues can restore physiological functions of the proteome, which is essential for oxidative stress tolerance of the extremophile Deinococcus radiodurans. However, the underlying mechanism regulating MsrA enzyme activity in D. radiodurans under oxidative stress has remained elusive. Here, we identified the function of MsrA in response to oxidative stress.
MeSH term(s)	Deinococcus/genetics ; Deinococcus/metabolism ; Methionine/metabolism ; Methionine Sulfoxide Reductases/genetics ; Methionine Sulfoxide Reductases/metabolism ; Oxidative Stress/physiology ; RNA/metabolism ; RNA, Messenger/metabolism
Chemical Substances	RNA, Messenger ; RNA (63231-63-0) ; Methionine (AE28F7PNPL) ; Methionine Sulfoxide Reductases (EC 1.8.4.-)
Language	English
Publishing date	2022-05-16
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	223011-2
ISSN	1098-5336 ; 0099-2240
ISSN (online)	1098-5336
ISSN	0099-2240
DOI	10.1128/aem.00038-22
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Article ; Online: CALMODULIN-LIKE-38 and PEP1 RECEPTOR 2 integrate nitrate and brassinosteroid signals to regulate root growth.

Song, Xiaoyun / Li, Jianfu / Lyu, Mengli / Kong, Xiuzhen / Hu, Shi / Song, Qingwei / Zuo, Kaijing

Plant physiology

2021 Volume 187, Issue 3, Page(s) 1779–1794

Abstract: Plants exhibit remarkable developmental plasticity, enabling them to adapt to adverse environmental conditions such as low nitrogen (N) in the soil. Brassinosteroids (BRs) promote root foraging for nutrients under mild N deficiency, but the crosstalk ... ...

Abstract	Plants exhibit remarkable developmental plasticity, enabling them to adapt to adverse environmental conditions such as low nitrogen (N) in the soil. Brassinosteroids (BRs) promote root foraging for nutrients under mild N deficiency, but the crosstalk between the BR- and N-signaling pathways in the regulation of root growth remains largely unknown. Here, we show that CALMODULIN-LIKE-38 (CML38), a calmodulin-like protein, specifically interacts with the PEP1 RECEPTOR 2 (PEPR2), and negatively regulates root elongation in Arabidopsis (Arabidopsis thaliana) in response to low nitrate (LN). CML38 and PEPR2 are transcriptionally induced by treatments of exogenous nitrate and BR. Compared with Col-0, the single mutants cml38 and pepr2 and the double mutant cml38 pepr2 displayed enhanced primary root growth and produced more lateral roots under LN. This is consistent with their higher nitrate absorption abilities, and their stronger expression of nitrate assimilation genes. Furthermore, CML38 and PEPR2 regulate common downstream genes related to BR signaling, and they have positive roles in BR signaling. Low N facilitated BR signal transmission in Col-0 and CML38- or PEPR2-overexpressing plants, but not in the cml38 and pepr2 mutants. Taken together, our results illustrate a mechanism by which CML38 interacts with PEPR2 to integrate LN and BR signals for coordinating root development to prevent quick depletion of N resources in Arabidopsis.
MeSH term(s)	Arabidopsis/genetics ; Arabidopsis/growth & development ; Arabidopsis/metabolism ; Arabidopsis Proteins/genetics ; Arabidopsis Proteins/metabolism ; Brassinosteroids/metabolism ; Calmodulin/genetics ; Calmodulin/metabolism ; Gene Expression Regulation, Plant ; Nitrates/metabolism ; Plant Roots/genetics ; Plant Roots/growth & development ; Protein Serine-Threonine Kinases/genetics ; Protein Serine-Threonine Kinases/metabolism ; Signal Transduction/genetics
Chemical Substances	Arabidopsis Proteins ; Brassinosteroids ; CML38 protein, Arabidopsis ; Calmodulin ; Nitrates ; PEPR2 protein, Arabidopsis (EC 2.7.11.1) ; Protein Serine-Threonine Kinases (EC 2.7.11.1)
Language	English
Publishing date	2021-10-07
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	208914-2
ISSN	1532-2548 ; 0032-0889
ISSN (online)	1532-2548
ISSN	0032-0889
DOI	10.1093/plphys/kiab323
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