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  1. Article ; Online: Recapitulating Cholangiopathy-Associated Necroptotic Cell Death In Vitro Using Human Cholangiocyte Organoids.

    Shi, Shaojun / Verstegen, Monique M A / Roest, Henk P / Ardisasmita, Arif I / Cao, Wanlu / Roos, Floris J M / de Ruiter, Petra E / Niemeijer, Marije / Pan, Qiuwei / IJzermans, Jan N M / van der Laan, Luc J W

    Cellular and molecular gastroenterology and hepatology

    2021  Volume 13, Issue 2, Page(s) 541–564

    Abstract: Background & aims: Liver and bile duct diseases often are associated with extensive cell death of cholangiocytes. Necroptosis represents a common mode of programmed cell death in cholangiopathy, however, detailed mechanistic knowledge is limited owing ... ...

    Abstract Background & aims: Liver and bile duct diseases often are associated with extensive cell death of cholangiocytes. Necroptosis represents a common mode of programmed cell death in cholangiopathy, however, detailed mechanistic knowledge is limited owing to the lack of appropriate in vitro models. To address this void, we investigated whether human intrahepatic cholangiocyte organoids (ICOs) can recapitulate cholangiopathy-associated necroptosis and whether this model can be used for drug screening.
    Methods: We evaluated the clinical relevance of necroptosis in end-stage liver diseases and liver transplantation by immunohistochemistry. Cholangiopathy-associated programmed cell death was evoked in ICOs derived from healthy donors or patients with primary sclerosing cholangitis or alcoholic liver diseases by the various stimuli.
    Results: The expression of key necroptosis mediators, receptor-interacting protein 3 and phosphorylated mixed lineage kinase domain-like, in cholangiocytes during end-stage liver diseases was confirmed. The phosphorylated mixed lineage kinase domain-like expression was etiology-dependent. Gene expression analysis confirmed that primary cholangiocytes are more prone to necroptosis compared with primary hepatocytes. Both apoptosis and necroptosis could be specifically evoked using tumor necrosis factor α and second mitochondrial-derived activator of caspases mimetic, with or without caspase inhibition in healthy and patient-derived ICOs. Necroptosis also was induced by ethanol metabolites or human bile in ICOs from donors and patients. The organoid cultures further uncovered interdonor variable and species-specific drug responses. Dabrafenib was identified as a potent necroptosis inhibitor and showed a protective effect against ethanol metabolite toxicity.
    Conclusions: Human ICOs recapitulate cholangiopathy-associated necroptosis and represent a useful in vitro platform for the study of biliary cytotoxicity and preclinical drug evaluation.
    MeSH term(s) Apoptosis ; Epithelial Cells ; Humans ; Liver ; Necroptosis ; Organoids/metabolism
    Language English
    Publishing date 2021-10-23
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2819778-1
    ISSN 2352-345X ; 2352-345X
    ISSN (online) 2352-345X
    ISSN 2352-345X
    DOI 10.1016/j.jcmgh.2021.10.009
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Evidence of B-cell follicles with germinal centers in chronic hepatitis C patients.

    de Ruiter, Petra E / van der Laan, Luc J W

    European journal of immunology

    2015  Volume 45, Issue 5, Page(s) 1570–1571

    MeSH term(s) B-Lymphocytes/immunology ; Female ; Germinal Center/immunology ; Hepacivirus/immunology ; Hepatitis C, Chronic/immunology ; Humans ; Immunoglobulin Heavy Chains/immunology ; Immunoglobulin Variable Region/immunology ; Liver/immunology ; Male ; Somatic Hypermutation, Immunoglobulin/immunology
    Chemical Substances Immunoglobulin Heavy Chains ; Immunoglobulin Variable Region
    Language English
    Publishing date 2015-05
    Publishing country Germany
    Document type Comment ; Letter ; Research Support, Non-U.S. Gov't
    ZDB-ID 120108-6
    ISSN 1521-4141 ; 0014-2980
    ISSN (online) 1521-4141
    ISSN 0014-2980
    DOI 10.1002/eji.201445389
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Interaction of immunosuppressants with HCV antivirals daclatasvir and asunaprevir: combined effects with mycophenolic acid.

    de Ruiter, Petra E / Gadjradj, Yashna / de Knegt, Robert J / Metselaar, Herold J / Ijzermans, Jan Nm / van der Laan, Luc Jw

    World journal of transplantation

    2018  Volume 8, Issue 5, Page(s) 156–166

    Abstract: Aim: To investigate the specific effects of immunosuppressants on the antiviral action of daclatasvir and asunaprevir.: Methods: The antiviral activity of daclatasvir (DCV) and asunaprevir (ASV) combined with immunosuppressants was tested using two !# ...

    Abstract Aim: To investigate the specific effects of immunosuppressants on the antiviral action of daclatasvir and asunaprevir.
    Methods: The antiviral activity of daclatasvir (DCV) and asunaprevir (ASV) combined with immunosuppressants was tested using two
    Results: Tacrolimus, rapamycin and cyclosporine did not negatively affect the antiviral action of DCV or ASV. Mycophenolic acid (MPA) showed additive antiviral effects combined with these direct acting antivirals (DAAs). MPA induces interferon-stimulated genes (ISGs) and is a potent GTP synthesis inhibitor. DCV or ASV did not induce ISGs expression nor affected ISG induction by MPA. Rather, the combined antiviral effect of MPA with DCV and ASV was partly mediated
    Conclusion: Immunosuppressants do not negatively affect the antiviral activity of DAAs. MPA has additive effect on the antiviral action of DCV and ASV. This combined benefit needs to be confirmed in prospective clinical trials.
    Language English
    Publishing date 2018-09-07
    Publishing country United States
    Document type Journal Article
    ISSN 2220-3230
    ISSN 2220-3230
    DOI 10.5500/wjt.v8.i5.156
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Rotavirus Infection and Cytopathogenesis in Human Biliary Organoids Potentially Recapitulate Biliary Atresia Development.

    Chen, Sunrui / Li, Pengfei / Wang, Yining / Yin, Yuebang / de Ruiter, Petra E / Verstegen, Monique M A / Peppelenbosch, Maikel P / van der Laan, Luc J W / Pan, Qiuwei

    mBio

    2020  Volume 11, Issue 4

    Abstract: Biliary atresia (BA) is a neonatal liver disease characterized by progressive fibroinflammatory obliteration of both intrahepatic and extrahepatic bile ducts. The etiologies of BA remain largely unknown, but rotavirus infection has been implicated at ... ...

    Abstract Biliary atresia (BA) is a neonatal liver disease characterized by progressive fibroinflammatory obliteration of both intrahepatic and extrahepatic bile ducts. The etiologies of BA remain largely unknown, but rotavirus infection has been implicated at least for a subset of patients, and this causal relation has been well demonstrated in mouse models. In this study, we aim to further consolidate this evidence in human biliary organoids. We obtained seven batches of human biliary organoids cultured from fetal liver, adult liver, and bile duct tissues. We found that these organoids are highly susceptible and support the full life cycle of rotavirus infection in three-dimensional culture. The robust infection triggers active virus-host interactions, including interferon-based host defense mechanisms and injury responses. We have observed direct cytopathogenesis in organoids upon rotavirus infection, which may partially recapitulate the development of BA. Importantly, we have demonstrated the efficacy of mycophenolic acid and interferon alpha but not ribavirin in inhibiting rotavirus in biliary organoids. Furthermore, neutralizing antibody targeting rotavirus VP7 protein effectively inhibits infection in organoids. Thus, we have substantiated the causal evidence of rotavirus inducing BA in humans and provided potential strategies to combat the disease.
    MeSH term(s) Antibodies, Neutralizing/pharmacology ; Antigens, Viral/immunology ; Antiviral Agents/pharmacology ; Biliary Atresia/pathology ; Biliary Atresia/virology ; Capsid Proteins/immunology ; Cytopathogenic Effect, Viral ; Host Microbial Interactions ; Humans ; Interferon-alpha/pharmacology ; Mycophenolic Acid/pharmacology ; Organoids/drug effects ; Organoids/pathology ; Organoids/virology ; Ribavirin/pharmacology ; Rotavirus Infections/pathology
    Chemical Substances Antibodies, Neutralizing ; Antigens, Viral ; Antiviral Agents ; Capsid Proteins ; Interferon-alpha ; VP7 protein, Rotavirus ; Ribavirin (49717AWG6K) ; Mycophenolic Acid (HU9DX48N0T)
    Language English
    Publishing date 2020-08-25
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2557172-2
    ISSN 2150-7511 ; 2161-2129
    ISSN (online) 2150-7511
    ISSN 2161-2129
    DOI 10.1128/mBio.01968-20
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: JAK-inhibitor tofacitinib suppresses interferon alfa production by plasmacytoid dendritic cells and inhibits arthrogenic and antiviral effects of interferon alfa.

    Boor, Patrick P C / de Ruiter, Petra E / Asmawidjaja, Patrick S / Lubberts, Erik / van der Laan, Luc J W / Kwekkeboom, Jaap

    Translational research : the journal of laboratory and clinical medicine

    2017  Volume 188, Page(s) 67–79

    Abstract: Tofacitinib is an oral Janus kinase inhibitor that is effective for the treatment of rheumatoid arthritis and shows encouraging therapeutic effects in several other autoimmune diseases. A prominent adverse effect of tofacitinib therapy is the increased ... ...

    Abstract Tofacitinib is an oral Janus kinase inhibitor that is effective for the treatment of rheumatoid arthritis and shows encouraging therapeutic effects in several other autoimmune diseases. A prominent adverse effect of tofacitinib therapy is the increased risk of viral infections. Despite its advanced stage of clinical development, the modes of action that mediate the beneficial and adverse effects of tofacitinib in autoimmune diseases remain unclear. Interferon alfa (IFNα) produced by plasmacytoid dendritic cells (PDCs) is critically involved in the pathogenesis of many systemic autoimmune diseases and in immunity to viral infections. Using in vitro culture models with human cells, we studied the effects of tofacitinib on PDC survival and IFNα production, and on arthrogenic and antiviral effects of IFNα. Tofacitinib inhibited the expression of antiapoptotic BCL-A1 and BCL-XL in human PDC and induced PDC apoptosis. TLR7 stimulation upregulated the levels of antiapoptotic Bcl-2 family members and prevented the induction of PDC apoptosis by tofacitinib. However, tofacitinib robustly inhibited the production of IFNα by toll like receptor-stimulated PDC. In addition, tofacitinib profoundly suppressed IFNα-induced upregulation of TLR3 on synovial fibroblasts, thereby inhibiting their cytokine and protease production in response to TLR3 ligation. Finally, tofacitinib counteracted the suppressive effects of IFNα on viral replication. Tofacitinib inhibits PDC survival and IFNα production and suppresses arthrogenic and antiviral effects of IFNα signaling. Inhibition of the IFNα pathway at 2 levels may contribute to the beneficial effects of tofacitinib in autoimmune diseases and explain the increased viral infection rates observed during tofacitinib treatment.
    MeSH term(s) Apoptosis/physiology ; Cell Line, Tumor ; Dendritic Cells/drug effects ; Dendritic Cells/metabolism ; Dose-Response Relationship, Drug ; Gene Expression Regulation/drug effects ; Hepacivirus/physiology ; Humans ; Interferon-alpha/genetics ; Interferon-alpha/metabolism ; Interleukin-3/genetics ; Interleukin-3/metabolism ; Piperidines/administration & dosage ; Piperidines/pharmacology ; Protein Kinase Inhibitors/administration & dosage ; Protein Kinase Inhibitors/pharmacology ; Proto-Oncogene Proteins c-bcl-2/genetics ; Proto-Oncogene Proteins c-bcl-2/metabolism ; Pyrimidines/administration & dosage ; Pyrimidines/pharmacology ; Pyrroles/administration & dosage ; Pyrroles/pharmacology ; STAT Transcription Factors/genetics ; STAT Transcription Factors/metabolism ; Virus Replication
    Chemical Substances Interferon-alpha ; Interleukin-3 ; Piperidines ; Protein Kinase Inhibitors ; Proto-Oncogene Proteins c-bcl-2 ; Pyrimidines ; Pyrroles ; STAT Transcription Factors ; tofacitinib (87LA6FU830)
    Language English
    Publishing date 2017-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2246684-8
    ISSN 1878-1810 ; 1532-6543 ; 1931-5244
    ISSN (online) 1878-1810 ; 1532-6543
    ISSN 1931-5244
    DOI 10.1016/j.trsl.2016.11.006
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Precancerous liver diseases do not cause increased mutagenesis in liver stem cells.

    Nguyen, Luan / Jager, Myrthe / Lieshout, Ruby / de Ruiter, Petra E / Locati, Mauro D / Besselink, Nicolle / van der Roest, Bastiaan / Janssen, Roel / Boymans, Sander / de Jonge, Jeroen / IJzermans, Jan N M / Doukas, Michail / Verstegen, Monique M A / van Boxtel, Ruben / van der Laan, Luc J W / Cuppen, Edwin / Kuijk, Ewart

    Communications biology

    2021  Volume 4, Issue 1, Page(s) 1301

    Abstract: Inflammatory liver disease increases the risk of developing primary liver cancer. The mechanism through which liver disease induces tumorigenesis remains unclear, but is thought to occur via increased mutagenesis. Here, we performed whole-genome ... ...

    Abstract Inflammatory liver disease increases the risk of developing primary liver cancer. The mechanism through which liver disease induces tumorigenesis remains unclear, but is thought to occur via increased mutagenesis. Here, we performed whole-genome sequencing on clonally expanded single liver stem cells cultured as intrahepatic cholangiocyte organoids (ICOs) from patients with alcoholic cirrhosis, non-alcoholic steatohepatitis (NASH), and primary sclerosing cholangitis (PSC). Surprisingly, we find that these precancerous liver disease conditions do not result in a detectable increased accumulation of mutations, nor altered mutation types in individual liver stem cells. This finding contrasts with the mutational load and typical mutational signatures reported for liver tumors, and argues against the hypothesis that liver disease drives tumorigenesis via a direct mechanism of induced mutagenesis. Disease conditions in the liver may thus act through indirect mechanisms to drive the transition from healthy to cancerous cells, such as changes to the microenvironment that favor the outgrowth of precancerous cells.
    MeSH term(s) Cholangitis, Sclerosing/genetics ; Humans ; Liver/physiology ; Liver Cirrhosis, Alcoholic/genetics ; Liver Diseases/genetics ; Mutagenesis ; Non-alcoholic Fatty Liver Disease/genetics ; Organoids/metabolism ; Precancerous Conditions/genetics ; Stem Cells/metabolism
    Language English
    Publishing date 2021-11-18
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2399-3642
    ISSN (online) 2399-3642
    DOI 10.1038/s42003-021-02839-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Distinct Antiviral Potency of Sofosbuvir Against Hepatitis C and E Viruses.

    Wang, Wenshi / Hakim, Mohamad S / Nair, Vidya P / de Ruiter, Petra E / Huang, Fen / Sprengers, Dave / Van Der Laan, Luc J W / Peppelenbosch, Maikel P / Surjit, Milan / Pan, Qiuwei

    Gastroenterology

    2016  Volume 151, Issue 6, Page(s) 1251–1253

    Language English
    Publishing date 2016-12
    Publishing country United States
    Document type Letter
    ZDB-ID 80112-4
    ISSN 1528-0012 ; 0016-5085
    ISSN (online) 1528-0012
    ISSN 0016-5085
    DOI 10.1053/j.gastro.2016.09.061
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Corrigendum to "MicroRNA profiles in graft preservation solution are predictive of ischemic-type biliary lesions after liver transplantation" [J Hepatol 2013; 59:1231-1238].

    Verhoeven, Cornelia J / Selten, Jasmijn W / Roest, Henk P / Farid, Waqar R R / de Ruiter, Petra E / Hansen, Bettina E / de Jonge, Jeroen / Kwekkeboom, Jaap / Metselaar, Herold J / Tilanus, Hugo W / Kazemier, Geert / IJzermans, Jan N M / van der Laan, Luc J W

    Journal of hepatology

    2017  

    Language English
    Publishing date 2017-09-27
    Publishing country Netherlands
    Document type Published Erratum
    ZDB-ID 605953-3
    ISSN 1600-0641 ; 0168-8278
    ISSN (online) 1600-0641
    ISSN 0168-8278
    DOI 10.1016/j.jhep.2017.09.001
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Mesenchymal Stromal Cell-Derived Factors Promote Tissue Repair in a Small-for-Size Ischemic Liver Model but Do Not Protect against Early Effects of Ischemia and Reperfusion Injury.

    Fouraschen, Suomi M G / Wolf, Joshua H / van der Laan, Luc J W / de Ruiter, Petra E / Hancock, Wayne W / van Kooten, Job P / Verstegen, Monique M A / Olthoff, Kim M / de Jonge, Jeroen

    Journal of immunology research

    2015  Volume 2015, Page(s) 202975

    Abstract: Unlabelled: Loss of liver mass and ischemia/reperfusion injury (IRI) are major contributors to postresectional liver failure and small-for-size syndrome. Mesenchymal stromal cell- (MSC-) secreted factors are described to stimulate regeneration after ... ...

    Abstract Unlabelled: Loss of liver mass and ischemia/reperfusion injury (IRI) are major contributors to postresectional liver failure and small-for-size syndrome. Mesenchymal stromal cell- (MSC-) secreted factors are described to stimulate regeneration after partial hepatectomy. This study investigates if liver-derived MSC-secreted factors also promote liver regeneration after resection in the presence of IRI. C57BL/6 mice underwent IRI of 70% of their liver mass, alone or combined with 50% partial hepatectomy (PH). Mice were treated with MSC-conditioned medium (MSC-CM) or unconditioned medium (UM) and sacrificed after 6 or 24 hours (IRI group) or after 48 hours (IRI + PH group). Blood and liver tissue were analyzed for tissue injury, hepatocyte proliferation, and gene expression. In the IRI alone model, serum ALT and AST levels, hepatic tissue damage, and inflammatory cytokine gene expression showed no significant differences between both treatment groups. In the IRI + PH model, significant reduction in hepatic tissue damage as well as a significant increase in hepatocyte proliferation was observed after MSC-CM treatment.
    Conclusion: Mesenchymal stromal cell-derived factors promote tissue regeneration of small-for-size livers exposed to ischemic conditions but do not protect against early ischemia and reperfusion injury itself. MSC-derived factors therefore represent a promising treatment strategy for small-for-size syndrome and postresectional liver failure.
    MeSH term(s) Animals ; Body Weight ; Cell Proliferation/drug effects ; Culture Media, Conditioned/pharmacology ; Disease Models, Animal ; Gene Expression Regulation/drug effects ; Hepatocytes/drug effects ; Hepatocytes/metabolism ; Humans ; Ischemia/drug therapy ; Ischemia/genetics ; Ischemia/metabolism ; Liver/blood supply ; Liver/drug effects ; Liver/metabolism ; Liver/pathology ; Liver Function Tests ; Liver Regeneration ; Male ; Mass Spectrometry ; Mesenchymal Stromal Cells/metabolism ; Mice ; Organ Size ; Reperfusion Injury/drug therapy ; Reperfusion Injury/genetics ; Reperfusion Injury/metabolism ; Reperfusion Injury/pathology
    Chemical Substances Culture Media, Conditioned
    Language English
    Publishing date 2015
    Publishing country Egypt
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2817541-4
    ISSN 2314-7156 ; 2314-8861
    ISSN (online) 2314-7156
    ISSN 2314-8861
    DOI 10.1155/2015/202975
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Polarized release of hepatic microRNAs into bile and serum in response to cellular injury and impaired liver function.

    Verhoeven, Cornelia J / Farid, Waqar R R / Roest, Henk P / Ramakrishnaiah, Vedashree / de Ruiter, Petra E / de Jonge, Jeroen / Kwekkeboom, Jaap / Metselaar, Herold J / Tilanus, Hugo W / Kazemier, Geert / Ijzermans, Jan N M / van der Laan, Luc J W

    Liver international : official journal of the International Association for the Study of the Liver

    2016  Volume 36, Issue 6, Page(s) 883–892

    Abstract: Background & aims: Extracellular microRNAs (miRNAs) in serum and bile are currently under intense investigation for biomarker purposes in liver disease. However, the directions and pathways by which miRNAs are released from hepatic cells remains largely ...

    Abstract Background & aims: Extracellular microRNAs (miRNAs) in serum and bile are currently under intense investigation for biomarker purposes in liver disease. However, the directions and pathways by which miRNAs are released from hepatic cells remains largely unknown. Here, we investigated the release of hepatocyte and cholangiocyte-derived miRNAs (HDmiRs and CDmiRs) into blood and bile during various (patho)physiological hepatic conditions.
    Methods: MiRNA release was analysed using longitudinally collected tissue and paired bile and serum samples (n = 124) that were obtained from liver transplant recipients during follow-up.
    Results: Cell-type specificity of HDmiRs and CDmiRs was confirmed in liver and common bile duct biopsies (P < 0.001). Analysis of paired bile and serum samples showed up to 20-times higher miRNA-levels in bile compared to serum (P < 0.0001). Fractionation of bile showed the majority of miRNAs being present in the unpelletable supernatant, where protein conjunctions protect miRNAs against degradation (P < 0.0001). During episodes of liver injury and histologically proven rejection in liver transplant recipients, relative HDmiR-levels in bile decreased while its levels in serum increased (P ≤ 0.015). Simultaneously, relative CDmiR-levels in bile significantly increased, while their levels in serum decreased. Related to liver excretory function, a strong positive correlation was observed between HDmiR-122 levels and bilirubin excretion into bile (R = 0.694, P < 0.0001), whereas CDmiRs showed an inverse correlation (P < 0.05).
    Conclusion: During impaired excretory function and injury, the liver shows polarized release of extracellular HDmiRs and CDmiRs. This sheds new light on the biology of hepatic miRNA release which is relevant for the interpretation of hepatic miRNAs as biomarkers.
    Language English
    Publishing date 2016-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2102783-3
    ISSN 1478-3231 ; 1478-3223
    ISSN (online) 1478-3231
    ISSN 1478-3223
    DOI 10.1111/liv.12955
    Database MEDical Literature Analysis and Retrieval System OnLINE

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