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  1. Article ; Online: COVID-19's influence on cardiac function: a machine learning perspective on ECG analysis.

    Gomes, Juliana Carneiro / de Santana, Maíra Araújo / Masood, Aras Ismael / de Lima, Clarisse Lins / Dos Santos, Wellington Pinheiro

    Medical & biological engineering & computing

    2023  Volume 61, Issue 5, Page(s) 1057–1081

    Abstract: In December 2019, the spread of the SARS-CoV-2 virus to the world gave rise to probably the biggest public health problem in the world: the COVID-19 pandemic. Initially seen only as a disease of the respiratory system, COVID-19 is actually a blood ... ...

    Abstract In December 2019, the spread of the SARS-CoV-2 virus to the world gave rise to probably the biggest public health problem in the world: the COVID-19 pandemic. Initially seen only as a disease of the respiratory system, COVID-19 is actually a blood disease with effects on the respiratory tract. Considering its influence on hematological parameters, how does COVID-19 affect cardiac function? Is it possible to support the clinical diagnosis of COVID-19 from the automatic analysis of electrocardiography? In this work, we sought to investigate how COVID-19 affects cardiac function using a machine learning approach to analyze electrocardiography (ECG) signals. We used a public database of ECG signals expressed as photographs of printed signals, obtained in the context of emergency care. This database has signals associated with abnormal heartbeat, myocardial infarction, history of myocardial infarction, COVID-19, and healthy heartbeat. We propose a system to support the diagnosis of COVID-19 based on hybrid deep architectures composed of pre-trained convolutional neural networks for feature extraction and Random Forests for classification. We investigated the LeNet, ResNet, and VGG16 networks. The best results were obtained with the VGG16 and Random Forest network with 100 trees, with attribute selection using particle swarm optimization. The instance size has been reduced from 4096 to 773 attributes. In the validation step, we obtained an accuracy of 94%, kappa index of 0.91, and sensitivity, specificity, and area under the ROC curve of 100%. This work showed that the influence of COVID-19 on cardiac function is quite considerable: COVID-19 did not present confusion with any heart disease, nor with signs of healthy individuals. It is also possible to build a solution to support the clinical diagnosis of COVID-19 in the context of emergency care from a non-invasive and technologically scalable solution, based on hybrid deep learning architectures.
    MeSH term(s) Humans ; COVID-19/diagnosis ; SARS-CoV-2 ; Pandemics ; Machine Learning ; Electrocardiography ; Myocardial Infarction/diagnosis
    Language English
    Publishing date 2023-01-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 282327-5
    ISSN 1741-0444 ; 0025-696X ; 0140-0118
    ISSN (online) 1741-0444
    ISSN 0025-696X ; 0140-0118
    DOI 10.1007/s11517-023-02773-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Covid-19 rapid test by combining a Random Forest-based web system and blood tests.

    Barbosa, Valter Augusto de Freitas / Gomes, Juliana Carneiro / de Santana, Maíra Araújo / de Lima, Clarisse Lins / Calado, Raquel Bezerra / Bertoldo Júnior, Cláudio Roberto / Albuquerque, Jeniffer Emidio de Almeida / de Souza, Rodrigo Gomes / de Araújo, Ricardo Juarez Escorel / Mattos Júnior, Luiz Alberto Reis / de Souza, Ricardo Emmanuel / Dos Santos, Wellington Pinheiro

    Journal of biomolecular structure & dynamics

    2021  Volume 40, Issue 22, Page(s) 11948–11967

    Abstract: The disease caused by the new type of coronavirus, Covid-19, has posed major public health challenges for many countries. With its rapid spread, since the beginning of the outbreak in December 2019, the disease transmitted by SARS-CoV-2 has already ... ...

    Abstract The disease caused by the new type of coronavirus, Covid-19, has posed major public health challenges for many countries. With its rapid spread, since the beginning of the outbreak in December 2019, the disease transmitted by SARS-CoV-2 has already caused over 2 million deaths to date. In this work, we propose a web solution, called Heg.IA, to optimize the diagnosis of Covid-19 through the use of artificial intelligence. Our system aims to support decision-making regarding to diagnosis of Covid-19 and to the indication of hospitalization on regular ward, semi-ICU or ICU based on decision a Random Forest architecture with 90 trees. The main idea is that healthcare professionals can insert 41 hematological parameters from common blood tests and arterial gasometry into the system. Then, Heg.IA will provide a diagnostic report. The system reached good results for both Covid-19 diagnosis and to recommend hospitalization. For the first scenario we found average results of accuracy of 92.891%±0.851, kappa index of 0.858 ± 0.017, sensitivity of 0.936 ± 0.011, precision of 0.923 ± 0.011, specificity of 0.921 ± 0.012 and area under ROC of 0.984 ± 0.003. As for the indication of hospitalization, we achieved excellent performance of accuracies above 99% and more than 0.99 for the other metrics in all situations. By using a computationally simple method, based on the classical decision trees, we were able to achieve high diagnosis performance. Heg.IA system may be a way to overcome the testing unavailability in the context of Covid-19.Communicated by Ramaswamy H. Sarma.
    MeSH term(s) Humans ; COVID-19/diagnosis ; SARS-CoV-2 ; COVID-19 Testing ; Random Forest ; Artificial Intelligence ; Hematologic Tests
    Language English
    Publishing date 2021-08-31
    Publishing country England
    Document type Journal Article
    ZDB-ID 49157-3
    ISSN 1538-0254 ; 0739-1102
    ISSN (online) 1538-0254
    ISSN 0739-1102
    DOI 10.1080/07391102.2021.1966509
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Covid-19 Dynamic Monitoring and Real-Time Spatio-Temporal Forecasting.

    da Silva, Cecilia Cordeiro / de Lima, Clarisse Lins / da Silva, Ana Clara Gomes / Silva, Eduardo Luiz / Marques, Gabriel Souza / de Araújo, Lucas Job Brito / Albuquerque Júnior, Luiz Antônio / de Souza, Samuel Barbosa Jatobá / de Santana, Maíra Araújo / Gomes, Juliana Carneiro / Barbosa, Valter Augusto de Freitas / Musah, Anwar / Kostkova, Patty / Dos Santos, Wellington Pinheiro / da Silva Filho, Abel Guilhermino

    Frontiers in public health

    2021  Volume 9, Page(s) 641253

    Abstract: Background: ...

    Abstract Background:
    MeSH term(s) Brazil/epidemiology ; COVID-19/epidemiology ; Epidemiological Monitoring ; Forecasting ; Humans ; Linear Models ; Neural Networks, Computer ; Spatio-Temporal Analysis ; Support Vector Machine
    Language English
    Publishing date 2021-04-08
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2711781-9
    ISSN 2296-2565 ; 2296-2565
    ISSN (online) 2296-2565
    ISSN 2296-2565
    DOI 10.3389/fpubh.2021.641253
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Heg.IA: An intelligent system to support diagnosis of Covid-19 based on blood tests

    Barbosa, Valter Augusto de Freitas / Gomes, Juliana Carneiro / de Santana, Maira Araujo / Albuquerque, Jeniffer Emidio de Almeida / de Souza, Rodrigo Gomes / de Souza, Ricardo Emmanuel / dos Santos, Wellington Pinheiro

    medRxiv

    Abstract: A new kind of coronavirus, the SARS-Cov2, started the biggest pandemic of the century. It has already killed more than 250,000 people. Because of this, it is necessary quick and precise diagnosis test. The current gold standard is the RT-PCR with DNA ... ...

    Abstract A new kind of coronavirus, the SARS-Cov2, started the biggest pandemic of the century. It has already killed more than 250,000 people. Because of this, it is necessary quick and precise diagnosis test. The current gold standard is the RT-PCR with DNA sequencing and identification, but its results takes too long to be available. Tests base on IgM/IgG antibodies have been used, but their sensitivity and specificity may be very low. Many studies have been demonstrating the Covid-19 impact in hematological parameters. This work proposes an intelligent system to support Covid-19 diagnosis based on blood testing. We tested several machine learning methods, and we achieved high classification performance: 95.159% +- 0.693 of overall accuracy, kappa index of 0.903 +- 0.014, sensitivity of 0.968 +- 0.007, precision of 0.938 +- 0.010 and specificity of 0.936 +- 0.011. These results were achieved using classical and low computational cost classifiers, with Bayes Network being the best of them. In addition, only 24 blood tests were needed. This points to the possibility of a new rapid test with low cost. The desktop version of the system is fully functional and available for free use.
    Keywords covid19
    Language English
    Publishing date 2020-05-18
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2020.05.14.20102533
    Database COVID19

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  5. Article ; Online: IKONOS: An intelligent tool to support diagnosis of Covid-19 by texture analysis of x-ray images

    Gomes, Juliana Carneiro / Barbosa, Valter Augusto de Freitas / de Santana, Maira Araujo / Bandeira, Jonathan / Valenca, Meuser Jorge Silva / de Souza, Ricardo Emmanuel / Ismael, Aras Masood / dos Santos, Wellington Pinheiro

    medRxiv

    Abstract: In late 2019, the SARS-Cov-2 spread worldwide. The virus has high rates of proliferation and causes severe respiratory symptoms, such as pneumonia. There is still no specific treatment and diagnosis for the disease. The standard diagnostic method for ... ...

    Abstract In late 2019, the SARS-Cov-2 spread worldwide. The virus has high rates of proliferation and causes severe respiratory symptoms, such as pneumonia. There is still no specific treatment and diagnosis for the disease. The standard diagnostic method for pneumonia is chest X-ray image. There are many advantages to using Covid-19 diagnostic X-rays: low cost, fast and widely available. We propose an intelligent system to support diagnosis by X-ray images.We tested Haralick and Zernike moments for feature extraction. Experiments with classic classifiers were done. Support vector machines stood out, reaching an average accuracy of 89:78%, average recall and sensitivity of 0:8979, and average precision and specificity of 0:8985 and 0:9963 respectively. The system is able to differentiate Covid-19 from viral and bacterial pneumonia, with low computational cost.
    Keywords covid19
    Language English
    Publishing date 2020-05-09
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2020.05.05.20092346
    Database COVID19

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  6. Article ; Online: COVID-SGIS: A Smart Tool for Dynamic Monitoring and Temporal Forecasting of Covid-19.

    de Lima, Clarisse Lins / da Silva, Cecilia Cordeiro / da Silva, Ana Clara Gomes / Luiz Silva, Eduardo / Marques, Gabriel Souza / de Araújo, Lucas Job Brito / Albuquerque Júnior, Luiz Antônio / de Souza, Samuel Barbosa Jatobá / de Santana, Maíra Araújo / Gomes, Juliana Carneiro / de Freitas Barbosa, Valter Augusto / Musah, Anwar / Kostkova, Patty / Dos Santos, Wellington Pinheiro / da Silva Filho, Abel Guilhermino

    Frontiers in public health

    2020  Volume 8, Page(s) 580815

    Abstract: Background: ...

    Abstract Background:
    MeSH term(s) Brazil/epidemiology ; COVID-19 ; Coronavirus Infections/epidemiology ; Forecasting ; Humans ; Pandemics ; Population Surveillance/methods ; Search Engine
    Language English
    Publishing date 2020-11-17
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2711781-9
    ISSN 2296-2565 ; 2296-2565
    ISSN (online) 2296-2565
    ISSN 2296-2565
    DOI 10.3389/fpubh.2020.580815
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Covid-19 rapid test by combining a random forest based web system and blood tests

    Barbosa, Valter Augusto de Freitas / Gomes, Juliana Carneiro / de Santana, Maira Araujo / de Lima, Clarisse Lins / Calado, Raquel Bezerra / Bertoldo Junior, Claudio Roberto / Albuquerque, Jeniffer Emidio de Almeida / de Souza, Rodrigo Gomes / de Araujo, Ricardo Juarez Escorel / de Souza, Ricardo Emmanuel / dos Santos, Wellington Pinheiro

    medRxiv

    Abstract: The disease caused by the new type of coronavirus, the Covid-19, has posed major public health challenges for many countries. With its rapid spread, since the beginning of the outbreak in December 2019, the disease transmitted by SARS-Cov2 has already ... ...

    Abstract The disease caused by the new type of coronavirus, the Covid-19, has posed major public health challenges for many countries. With its rapid spread, since the beginning of the outbreak in December 2019, the disease transmitted by SARS-Cov2 has already caused over 400 thousand deaths to date. The diagnosis of the disease has an important role in combating Covid-19. Proposed method In this work, we propose a web system, Heg.IA, which seeks to optimize the diagnosis of Covid-19 through the use of artificial intelligence. The main ideia is that healthcare professionals can insert 41 hematological parameters from common blood tests and arterial gasometry into the system. Then, Heg.IA will provide a diagnostic report. It will indicate if the patient is infected with SARS-Cov2 virus, and also predict the type of hospitalization (regular ward, semi-ICU, or ICU). We developed a web system called Heg.IA to support decision-making regarding to diagnosis of Covid-19 and to the indication of hospitalization on regular ward, semi-ICU or ICU. This application is based on decision trees in a Random Forest architecture with 90 trees. The system showed to be highly efficient, with great results for both Covid-19 diagnosis and to recommend hospitalization. For the first scenario we found average results of accuracy of 92.891% ± 0.851, kappa index of 0.858 ± 0.017, sensitivity of 0.936 ± 0.011, precision of 0.923 ± 0.011, specificity of 0.921 ± 0.012 and area under ROC of 0.984 ± 0.003. As for the indication of hospitalization, we achieved excellent performance of accuracies above 99% and more than 0.99 for the other metrics in all situations. By using a computationally simple method, based on the classical decision trees, we were able to achieve high diagnosis performance. Heg.IA system may be a way to overcome the testing unavailability in the context of Covid-19. We also expect the system will provide wide access to Covid-19 effective diagnosis and thereby reach and help saving lives.
    Keywords covid19
    Language English
    Publishing date 2020-06-16
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2020.06.12.20129866
    Database COVID19

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  8. Article ; Online: Rapid protocols to support Covid-19 clinical diagnosis based on hematological parameters

    Gomes, Juliana Carneiro / Barbosa, Valter Augusto de Freitas / de Santana, Maira Araujo / de Lima, Clarisse Lins / Calado, Raquel Bezerra / Bertoldo Junior, Claudio Roberto / Albuquerque, Jeniffer Emidio de Almeida / de Souza, Rodrigo Gomes / de Araujo, Ricardo Juarez Escorel / Moreno, Giselle Machado Magalhaes / Soares, Luiz Alberto Lira / Mattos Junior, Luiz Alberto Reis / de Souza, Ricardo Emmanuel / dos Santos, Wellington Pinheiro

    medRxiv

    Abstract: Purpose In December 2019, the Covid-19 pandemic began in the world. To reduce mortality, in addiction to mass vaccination, it is necessary to massify and accelerate clinical diagnosis, as well as creating new ways of monitoring patients that can help in ... ...

    Abstract Purpose In December 2019, the Covid-19 pandemic began in the world. To reduce mortality, in addiction to mass vaccination, it is necessary to massify and accelerate clinical diagnosis, as well as creating new ways of monitoring patients that can help in the construction of specific treatments for the disease. Objective In this work, we propose rapid protocols for clinical diagnosis of Covid-19 through the automatic analysis of hematological parameters using Evolutionary Computing and Machine Learning. These hematological parameters are obtained from blood tests common in clinical practice. Method We investigated the best classifier architectures. Then, we applied the particle swarm optimization algorithm (PSO) to select the most relevant attributes: serum glucose, troponin, partial thromboplastin time, ferritin, D-dimer, lactic dehydrogenase, and indirect bilirubin. Finally, we used decision trees to build four rapid protocols for Covid-19 clinical diagnosis. Results We developed a web system for Covid-19 diagnosis support. Using a 100-tree Random Forest, we obtained results for accuracy, sensitivity and specificity superior to 99%. Conclusion By using a reduced set of hematological parameters common in clinical practice, it was possible to achieve results of accuracy, sensitivity and specificity comparable to those obtained with RT-PCR. It was also possible to automatically generate clinical decision protocols, allowing relatively accurate clinical diagnosis even without the aid of the web decision support system.
    Keywords covid19
    Language English
    Publishing date 2021-06-28
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2021.06.21.21259252
    Database COVID19

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  9. Article ; Online: COVID-SGIS

    de Lima, Clarisse Lins / da Silva, Cecilia Cordeiro / da Silva, Ana Clara Gomes / Luiz Silva, Eduardo / Marques, Gabriel Souza / de Araújo, Lucas Job Brito / Albuquerque Júnior, Luiz Antônio / de Souza, Samuel Barbosa Jatobá / de Santana, Maíra Araújo / Gomes, Juliana Carneiro / de Freitas Barbosa, Valter Augusto / Musah, Anwar / Kostkova, Patty / dos Santos, Wellington Pinheiro / da Silva Filho, Abel Guilhermino

    Frontiers in Public Health

    A Smart Tool for Dynamic Monitoring and Temporal Forecasting of Covid-19

    2020  Volume 8

    Keywords covid19
    Publisher Frontiers Media SA
    Publishing country ch
    Document type Article ; Online
    ZDB-ID 2711781-9
    ISSN 2296-2565
    ISSN 2296-2565
    DOI 10.3389/fpubh.2020.580815
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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