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  1. Article ; Online: The reference genome of Macropodus opercularis (the paradise fish).

    Fodor, Erika / Okendo, Javan / Szabó, Nóra / Szabó, Kata / Czimer, Dávid / Tarján-Rácz, Anita / Szeverényi, Ildikó / Low, Bi Wei / Liew, Jia Huan / Koren, Sergey / Rhie, Arang / Orbán, László / Miklósi, Ádám / Varga, Máté / Burgess, Shawn M

    Scientific data

    2024  Volume 11, Issue 1, Page(s) 540

    Abstract: Amongst fishes, zebrafish (Danio rerio) has gained popularity as a model system over most other species and while their value as a model is well documented, their usefulness is limited in certain fields of research such as behavior. By embracing other, ... ...

    Abstract Amongst fishes, zebrafish (Danio rerio) has gained popularity as a model system over most other species and while their value as a model is well documented, their usefulness is limited in certain fields of research such as behavior. By embracing other, less conventional experimental organisms, opportunities arise to gain broader insights into evolution and development, as well as studying behavioral aspects not available in current popular model systems. The anabantoid paradise fish (Macropodus opercularis), an "air-breather" species has a highly complex behavioral repertoire and has been the subject of many ethological investigations but lacks genomic resources. Here we report the reference genome assembly of M. opercularis using long-read sequences at 150-fold coverage. The final assembly consisted of 483,077,705 base pairs (~483 Mb) on 152 contigs. Within the assembled genome we identified and annotated 20,157 protein coding genes and assigned ~90% of them to orthogroups.
    MeSH term(s) Animals ; Genome ; Fishes/genetics
    Language English
    Publishing date 2024-05-25
    Publishing country England
    Document type Dataset ; Journal Article
    ZDB-ID 2775191-0
    ISSN 2052-4463 ; 2052-4463
    ISSN (online) 2052-4463
    ISSN 2052-4463
    DOI 10.1038/s41597-024-03277-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: The reference genome of the paradise fish (

    Fodor, Erika / Okendo, Javan / Szabó, Nóra / Szabó, Kata / Czimer, Dávid / Tarján-Rácz, Anita / Szeverényi, Ildikó / Low, Bi Wei / Liew, Jia Huan / Koren, Sergey / Rhie, Arang / Orbán, László / Miklósi, Ádám / Varga, Máté / Burgess, Shawn M

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Over the decades, a small number of model species, each representative of a larger taxa, have dominated the field of biological research. Amongst fishes, zebrafish ( ...

    Abstract Over the decades, a small number of model species, each representative of a larger taxa, have dominated the field of biological research. Amongst fishes, zebrafish (
    Language English
    Publishing date 2023-08-10
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.08.10.552018
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: A New Zebrafish Model for Pseudoxanthoma Elasticum.

    Czimer, Dávid / Porok, Klaudia / Csete, Dániel / Gyüre, Zsolt / Lavró, Viktória / Fülöp, Krisztina / Chen, Zelin / Gyergyák, Hella / Tusnády, Gábor E / Burgess, Shawn M / Mócsai, Attila / Váradi, András / Varga, Máté

    Frontiers in cell and developmental biology

    2021  Volume 9, Page(s) 628699

    Abstract: Calcification of various tissues is a significant health issue associated with aging, cancer and autoimmune diseases. There are both environmental and genetic factors behind this phenomenon and understanding them is essential for the development of ... ...

    Abstract Calcification of various tissues is a significant health issue associated with aging, cancer and autoimmune diseases. There are both environmental and genetic factors behind this phenomenon and understanding them is essential for the development of efficient therapeutic approaches. Pseudoxanthoma elasticum (PXE) is a rare genetic disease, a prototype for calcification disorders, resulting from the dysfunction of ABCC6, a transport protein found in the membranes of cells. It is identified by excess calcification in a variety of tissues (e.g., eyes, skin, arteries) and currently it has no cure, known treatments target the symptoms only. Preclinical studies of PXE have been successful in mice, proving the usefulness of animal models for the study of the disease. Here, we present a new zebrafish (
    Language English
    Publishing date 2021-03-09
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2737824-X
    ISSN 2296-634X
    ISSN 2296-634X
    DOI 10.3389/fcell.2021.628699
    Database MEDical Literature Analysis and Retrieval System OnLINE

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