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  1. Artikel: Ready-to-use vertical flow paper device for instrument-free room temperature reverse transcription

    Shiju, Thomas Michael / Tripura, Chaturvedula / Saha, Pritam / Mansingh, Arushi / Challa, Venkatapathi / Bhatnagar, Ira / Nagesh, Narayana / Asthana, Amit

    New biotechnology. 2022 May 25, v. 68

    2022  

    Abstract: Paper-based nucleic acid detection and diagnosis are currently gaining much interest in point-of-care (POC) applications. The major steps involved in any nucleic acid amplification testing (NAAT) based diagnostics are nucleic acid isolation, reverse ... ...

    Abstract Paper-based nucleic acid detection and diagnosis are currently gaining much interest in point-of-care (POC) applications. The major steps involved in any nucleic acid amplification testing (NAAT) based diagnostics are nucleic acid isolation, reverse transcription (RT) (in the case of RNA), amplification and detection. RT is an important step in quantifying the viral load in case of disease diagnosis as well as quantifying gene expression levels in other molecular studies. cDNA synthesis is routinely carried out using a thermal cycler, with the process requiring temperatures between 40ºC to 65ºC. Here we report for the first time an instrument-free RT, performed at room temperature on cellulose-based paper devices. cDNA synthesis on paper was confirmed by RT-PCR and Sanger sequencing of the PCR products. Purified RNA from varied sources such as cell lysate, tissue and blood were used to test the methodology. Synthetic hepatitis C virus (HCV) RNA and human blood RNA were used as proof-of-concept to demonstrate the use of these devices in diagnostic applications. Further, ready-to-use paper-based reverse transcription (PRT) devices have been developed, wherein only the RNA sample is added on the device and the cDNA can be eluted after 30 min of incubation at room temperature. The devices were found to be stable for 30 days at − 20ºC storage. The cellulose-based PRT devices are simple, time saving and user-friendly for a complete instrument-free cDNA synthesis at room temperature.
    Schlagwörter Hepatitis C virus ; RNA ; ambient temperature ; biotechnology ; blood ; diagnostic techniques ; disease diagnosis ; gene amplification ; gene expression ; humans ; point-of-care systems ; reverse transcription ; viral load
    Sprache Englisch
    Erscheinungsverlauf 2022-0525
    Umfang p. 77-86.
    Erscheinungsort Elsevier B.V.
    Dokumenttyp Artikel
    ZDB-ID 2400836-9
    ISSN 1876-4347 ; 1871-6784
    ISSN (online) 1876-4347
    ISSN 1871-6784
    DOI 10.1016/j.nbt.2022.02.001
    Datenquelle NAL Katalog (AGRICOLA)

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  2. Artikel ; Online: Ready-to-use vertical flow paper device for instrument-free room temperature reverse transcription.

    Shiju, Thomas Michael / Tripura, Chaturvedula / Saha, Pritam / Mansingh, Arushi / Challa, Venkatapathi / Bhatnagar, Ira / Nagesh, Narayana / Asthana, Amit

    New biotechnology

    2022  Band 68, Seite(n) 77–86

    Abstract: Paper-based nucleic acid detection and diagnosis are currently gaining much interest in point-of-care (POC) applications. The major steps involved in any nucleic acid amplification testing (NAAT) based diagnostics are nucleic acid isolation, reverse ... ...

    Abstract Paper-based nucleic acid detection and diagnosis are currently gaining much interest in point-of-care (POC) applications. The major steps involved in any nucleic acid amplification testing (NAAT) based diagnostics are nucleic acid isolation, reverse transcription (RT) (in the case of RNA), amplification and detection. RT is an important step in quantifying the viral load in case of disease diagnosis as well as quantifying gene expression levels in other molecular studies. cDNA synthesis is routinely carried out using a thermal cycler, with the process requiring temperatures between 40ºC to 65ºC. Here we report for the first time an instrument-free RT, performed at room temperature on cellulose-based paper devices. cDNA synthesis on paper was confirmed by RT-PCR and Sanger sequencing of the PCR products. Purified RNA from varied sources such as cell lysate, tissue and blood were used to test the methodology. Synthetic hepatitis C virus (HCV) RNA and human blood RNA were used as proof-of-concept to demonstrate the use of these devices in diagnostic applications. Further, ready-to-use paper-based reverse transcription (PRT) devices have been developed, wherein only the RNA sample is added on the device and the cDNA can be eluted after 30 min of incubation at room temperature. The devices were found to be stable for 30 days at - 20ºC storage. The cellulose-based PRT devices are simple, time saving and user-friendly for a complete instrument-free cDNA synthesis at room temperature.
    Mesh-Begriff(e) Humans ; Nucleic Acid Amplification Techniques/methods ; RNA ; Reverse Transcription ; Temperature
    Chemische Substanzen RNA (63231-63-0)
    Sprache Englisch
    Erscheinungsdatum 2022-02-09
    Erscheinungsland Netherlands
    Dokumenttyp Journal Article
    ZDB-ID 2400836-9
    ISSN 1876-4347 ; 1876-4347
    ISSN (online) 1876-4347
    ISSN 1876-4347
    DOI 10.1016/j.nbt.2022.02.001
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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