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  1. Artikel ; Online: A Combined Region- and Pixel-Based Deep Learning Approach for Quantifying Abdominal Adipose Tissue in Adolescents Using Dixon Magnetic Resonance Imaging.

    Ogunleye, Olanrewaju A / Raviprakash, Harish / Simmons, Ashlee M / Bovell, Rhasaan T M / Martinez, Pedro E / Yanovski, Jack A / Berman, Karen F / Schmidt, Peter J / Jones, Elizabeth C / Bagheri, Hadi / Biassou, Nadia M / Hsu, Li-Yueh

    Tomography (Ann Arbor, Mich.)

    2023  Band 9, Heft 1, Seite(n) 139–149

    Abstract: Background: The development of adipose tissue during adolescence may provide valuable insights into obesity-associated diseases. We propose an automated convolutional neural network (CNN) approach using Dixon-based magnetic resonance imaging (MRI) to ... ...

    Abstract Background: The development of adipose tissue during adolescence may provide valuable insights into obesity-associated diseases. We propose an automated convolutional neural network (CNN) approach using Dixon-based magnetic resonance imaging (MRI) to quantity abdominal subcutaneous adipose tissue (SAT) and visceral adipose tissue (VAT) in children and adolescents.
    Methods: 474 abdominal Dixon MRI scans of 136 young healthy volunteers (aged 8-18) were included in this study. For each scan, an axial fat-only Dixon image located at the L2-L3 disc space and another image at the L4-L5 disc space were selected for quantification. For each image, an outer and an inner region around the abdomen wall, as well as SAT and VAT pixel masks, were generated by expert readers as reference standards. A standard U-Net CNN architecture was then used to train two models: one for region segmentation and one for fat pixel classification. The performance was evaluated using the dice similarity coefficient (DSC) with fivefold cross-validation, and by Pearson correlation and the Student's t-test against the reference standards.
    Results: For the DSC results, means and standard deviations of the outer region, inner region, SAT, and VAT comparisons were 0.974 ± 0.026, 0.997 ± 0.003, 0.981 ± 0.025, and 0.932 ± 0.047, respectively. Pearson coefficients were 1.000 for both outer and inner regions, and 1.000 and 0.982 for SAT and VAT comparisons, respectively (all
    Conclusion: These results show that our method not only provides excellent agreement with the reference SAT and VAT measurements, but also accurate abdominal wall region segmentation. The proposed combined region- and pixel-based CNN approach provides automated abdominal wall segmentation as well as SAT and VAT quantification with Dixon MRI and enables objective longitudinal assessment of adipose tissues in children during adolescence.
    Mesh-Begriff(e) Child ; Humans ; Adolescent ; Deep Learning ; Algorithms ; Reproducibility of Results ; Abdominal Fat/diagnostic imaging ; Magnetic Resonance Imaging/methods
    Sprache Englisch
    Erscheinungsdatum 2023-01-15
    Erscheinungsland Switzerland
    Dokumenttyp Journal Article ; Research Support, N.I.H., Intramural
    ISSN 2379-139X
    ISSN (online) 2379-139X
    DOI 10.3390/tomography9010012
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Artikel: Quick guide on radiology image pre-processing for deep learning applications in prostate cancer research.

    Masoudi, Samira / Harmon, Stephanie A / Mehralivand, Sherif / Walker, Stephanie M / Raviprakash, Harish / Bagci, Ulas / Choyke, Peter L / Turkbey, Baris

    Journal of medical imaging (Bellingham, Wash.)

    2021  Band 8, Heft 1, Seite(n) 10901

    Abstract: ... ...

    Abstract Purpose
    Sprache Englisch
    Erscheinungsdatum 2021-01-06
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Review
    ISSN 2329-4302
    ISSN 2329-4302
    DOI 10.1117/1.JMI.8.1.010901
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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