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  1. Artikel ; Online: Single-nucleus multiomic mapping of m

    Hamashima, Kiyofumi / Wong, Ka Wai / Sam, Tsz Wing / Teo, Jia Hao Jackie / Taneja, Reshma / Le, Minh T N / Li, Qi-Jing / Hanna, Jacob H / Li, Hu / Loh, Yuin-Han

    Molecular cell

    2023  

    Abstract: ... ...

    Abstract N
    Sprache Englisch
    Erscheinungsdatum 2023-08-25
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ZDB-ID 1415236-8
    ISSN 1097-4164 ; 1097-2765
    ISSN (online) 1097-4164
    ISSN 1097-2765
    DOI 10.1016/j.molcel.2023.08.010
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Artikel: Independent regulation of Z-lines and M-lines during sarcomere assembly in cardiac myocytes revealed by the automatic image analysis software sarcApp.

    Neininger-Castro, Abigail C / Hayes, James B / Sanchez, Zachary C / Taneja, Nilay / Fenix, Aidan M / Moparthi, Satish / Vassilopoulos, Stéphane / Burnette, Dylan T

    bioRxiv : the preprint server for biology

    2023  

    Abstract: ... of both precursors and sarcomeres/myofibrils. We then expanded sarcApp to analyze "M-Lines" using the localization ... of myomesin and a protein that connects the Z-Lines to the M-Line (titin). sarcApp produces 33 distinct ... perturbations that affected Z-Lines and M-Lines differently, suggesting that they may be regulated independently ...

    Abstract Sarcomeres are the basic contractile units within cardiac myocytes, and the collective shortening of sarcomeres aligned along myofibrils generates the force driving the heartbeat. The alignment of the individual sarcomeres is important for proper force generation, and misaligned sarcomeres are associated with diseases including cardiomyopathies and COVID-19. The actin bundling protein, α-actinin-2, localizes to the "Z-Bodies" of sarcomere precursors and the "Z-Lines" of sarcomeres, and has been used previously to assess sarcomere assembly and maintenance. Previous measurements of α-actinin-2 organization have been largely accomplished manually, which is time-consuming and has hampered research progress. Here, we introduce sarcApp, an image analysis tool that quantifies several components of the cardiac sarcomere and their alignment in muscle cells and tissue. We first developed sarcApp to utilize deep learning-based segmentation and real space quantification to measure α-actinin-2 structures and determine the organization of both precursors and sarcomeres/myofibrils. We then expanded sarcApp to analyze "M-Lines" using the localization of myomesin and a protein that connects the Z-Lines to the M-Line (titin). sarcApp produces 33 distinct measurements per cell and 24 per myofibril that allow for precise quantification of changes in sarcomeres, myofibrils, and their precursors. We validated this system with perturbations to sarcomere assembly. We found perturbations that affected Z-Lines and M-Lines differently, suggesting that they may be regulated independently during sarcomere assembly.
    Sprache Englisch
    Erscheinungsdatum 2023-10-06
    Erscheinungsland United States
    Dokumenttyp Preprint
    DOI 10.1101/2023.01.11.523681
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  3. Artikel ; Online: Independent regulation of Z-lines and M-lines during sarcomere assembly in cardiac myocytes revealed by the automatic image analysis software sarcApp.

    Neininger-Castro, Abigail C / Hayes, James B / Sanchez, Zachary C / Taneja, Nilay / Fenix, Aidan M / Moparthi, Satish / Vassilopoulos, Stéphane / Burnette, Dylan Tyler

    eLife

    2023  Band 12

    Abstract: ... of myomesin and a protein that connects the Z-Lines to the M-Line (titin). sarcApp produces 33 distinct ... perturbations that affected Z-Lines and M-Lines differently, suggesting that they may be regulated independently ... of both precursors and sarcomeres/myofibrils. We then expanded sarcApp to analyze 'M-Lines' using the localization ...

    Abstract Sarcomeres are the basic contractile units within cardiac myocytes, and the collective shortening of sarcomeres aligned along myofibrils generates the force driving the heartbeat. The alignment of the individual sarcomeres is important for proper force generation, and misaligned sarcomeres are associated with diseases, including cardiomyopathies and COVID-19. The actin bundling protein, α-actinin-2, localizes to the 'Z-Bodies" of sarcomere precursors and the 'Z-Lines' of sarcomeres, and has been used previously to assess sarcomere assembly and maintenance. Previous measurements of α-actinin-2 organization have been largely accomplished manually, which is time-consuming and has hampered research progress. Here, we introduce sarcApp, an image analysis tool that quantifies several components of the cardiac sarcomere and their alignment in muscle cells and tissue. We first developed sarcApp to utilize deep learning-based segmentation and real space quantification to measure α-actinin-2 structures and determine the organization of both precursors and sarcomeres/myofibrils. We then expanded sarcApp to analyze 'M-Lines' using the localization of myomesin and a protein that connects the Z-Lines to the M-Line (titin). sarcApp produces 33 distinct measurements per cell and 24 per myofibril that allow for precise quantification of changes in sarcomeres, myofibrils, and their precursors. We validated this system with perturbations to sarcomere assembly. We found perturbations that affected Z-Lines and M-Lines differently, suggesting that they may be regulated independently during sarcomere assembly.
    Mesh-Begriff(e) Sarcomeres/metabolism ; Myocytes, Cardiac/metabolism ; Actinin/metabolism ; Myofibrils/metabolism ; Connectin/metabolism ; Software
    Chemische Substanzen Actinin (11003-00-2) ; Connectin
    Sprache Englisch
    Erscheinungsdatum 2023-11-03
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.87065
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  4. Artikel ; Online: Independent regulation of Z-lines and M-lines during sarcomere assembly in cardiac myocytes revealed by the automatic image analysis software sarcApp

    Abigail C Neininger-Castro / James B Hayes / Zachary C Sanchez / Nilay Taneja / Aidan M Fenix / Satish Moparthi / Stéphane Vassilopoulos / Dylan Tyler Burnette

    eLife, Vol

    2023  Band 12

    Abstract: ... of both precursors and sarcomeres/myofibrils. We then expanded sarcApp to analyze ‘M-Lines’ using the localization ... of myomesin and a protein that connects the Z-Lines to the M-Line (titin). sarcApp produces 33 distinct ... perturbations that affected Z-Lines and M-Lines differently, suggesting that they may be regulated independently ...

    Abstract Sarcomeres are the basic contractile units within cardiac myocytes, and the collective shortening of sarcomeres aligned along myofibrils generates the force driving the heartbeat. The alignment of the individual sarcomeres is important for proper force generation, and misaligned sarcomeres are associated with diseases, including cardiomyopathies and COVID-19. The actin bundling protein, α-actinin-2, localizes to the ‘Z-Bodies” of sarcomere precursors and the ‘Z-Lines’ of sarcomeres, and has been used previously to assess sarcomere assembly and maintenance. Previous measurements of α-actinin-2 organization have been largely accomplished manually, which is time-consuming and has hampered research progress. Here, we introduce sarcApp, an image analysis tool that quantifies several components of the cardiac sarcomere and their alignment in muscle cells and tissue. We first developed sarcApp to utilize deep learning-based segmentation and real space quantification to measure α-actinin-2 structures and determine the organization of both precursors and sarcomeres/myofibrils. We then expanded sarcApp to analyze ‘M-Lines’ using the localization of myomesin and a protein that connects the Z-Lines to the M-Line (titin). sarcApp produces 33 distinct measurements per cell and 24 per myofibril that allow for precise quantification of changes in sarcomeres, myofibrils, and their precursors. We validated this system with perturbations to sarcomere assembly. We found perturbations that affected Z-Lines and M-Lines differently, suggesting that they may be regulated independently during sarcomere assembly.
    Schlagwörter cardiac myocyte ; sarcomere ; myofibril ; Medicine ; R ; Science ; Q ; Biology (General) ; QH301-705.5
    Sprache Englisch
    Erscheinungsdatum 2023-11-01T00:00:00Z
    Verlag eLife Sciences Publications Ltd
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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  5. Artikel ; Online: Comparison of the diagnostic accuracy of 99 m-Tc-MDP bone scintigraphy and 18 F-FDG PET/CT for the detection of skeletal metastases.

    Chang, Connie Y / Gill, Corey M / Joseph Simeone, F / Taneja, Atul K / Huang, Ambrose J / Torriani, Martin / Bredella, Miriam A

    Acta radiologica (Stockholm, Sweden : 1987)

    2016  Band 57, Heft 1, Seite(n) 58–65

    Abstract: ... PET/CT and technetium-99 m-bone scintigraphy (bone scan) for the detection of skeletal metastases ...

    Abstract Background: Fluorine-18-fluorodeoxyglucose positron emission tomography/computed tomography (FDG PET/CT) is commonly performed for cancer staging, as it can detect metastatic disease in multiple organ systems. However, there has been some controversy in the scientific literature when comparing FDG PET/CT and technetium-99 m-bone scintigraphy (bone scan) for the detection of skeletal metastases.
    Purpose: To compare the accuracy of FDG PET/CT with bone scan for the detection of skeletal metastases.
    Material and methods: The study group comprised 202 adult cancer patients who underwent both FDG PET/CT and bone scan within 31 days for staging. Bone scans and FDG PET/CT were evaluated by two musculoskeletal radiologists for the presence and location of skeletal metastatic disease. Confirmation of the final diagnosis was based on the CT or magnetic resonance imaging (MRI) appearance, follow-up imaging, or histology.
    Results: The sensitivity, specificity, and accuracy for detecting skeletal metastatic disease of FDG PET/CT were 97%, 98%, and 98%, respectively, and of bone scan were 83%, 98%, and 93%, respectively. The lesions that bone scan most commonly missed were located in the pelvis, spine, and sacrum. FDG PET/CT missed mostly lesions that were outside of the field of view, but in all of these cases the patient had additional sites of skeletal metastatic disease. Bone scan falsely identified six metastatic lesions and FDG PET/CT falsely identified three metastatic lesions.
    Conclusion: FDG PET/CT is an accurate technique for detection of skeletal metastases, and is superior to bone scan, especially in the spine and pelvis.
    Mesh-Begriff(e) Adolescent ; Adult ; Aged ; Aged, 80 and over ; Bone Neoplasms/diagnostic imaging ; Bone Neoplasms/secondary ; Child ; Female ; Fluorodeoxyglucose F18 ; Humans ; Magnetic Resonance Imaging ; Male ; Middle Aged ; Multimodal Imaging ; Neoplasm Staging ; Positron-Emission Tomography ; Radiopharmaceuticals ; Sensitivity and Specificity ; Technetium Tc 99m Medronate ; Tomography, X-Ray Computed
    Chemische Substanzen Radiopharmaceuticals ; Fluorodeoxyglucose F18 (0Z5B2CJX4D) ; Technetium Tc 99m Medronate (X89XV46R07)
    Sprache Englisch
    Erscheinungsdatum 2016-01
    Erscheinungsland England
    Dokumenttyp Comparative Study ; Journal Article
    ZDB-ID 105-3
    ISSN 1600-0455 ; 0284-1851 ; 0349-652X
    ISSN (online) 1600-0455
    ISSN 0284-1851 ; 0349-652X
    DOI 10.1177/0284185114564438
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  6. Artikel: Iodobenzene and m-chloroperbenzoic acid mediated oxidative dearomatization of phenols

    Taneja, Neha / Rama Krishna Peddinti

    Tetrahedron letters. 2016 Aug. 31, v. 57

    2016  

    Abstract: ... monoketals by catalytic amount of iodobenzene, and m-CPBA as a co-oxidant has been achieved via in situ ...

    Abstract Oxidative dearomatization of 2- and 4-substituted phenols to their corresponding benzoquinone monoketals by catalytic amount of iodobenzene, and m-CPBA as a co-oxidant has been achieved via in situ generation of PhIO2, a hypervalent iodine(V) species. The transiently generated orthobenzoquinone monoketals further underwent Diels–Alder reaction with various dienophiles to furnish densely substituted bicyclo[2.2.2]octenones in high selectivities and yields. This methodology features ready availability of reagents, cost effectiveness, safety, brevity, selectivity, diversity and excellent yields.
    Schlagwörter benzoquinones ; chemical structure ; cost effectiveness ; cycloaddition reactions ; iodine ; phenols
    Sprache Englisch
    Erscheinungsverlauf 2016-0831
    Umfang p. 3958-3963.
    Erscheinungsort Elsevier Ltd
    Dokumenttyp Artikel
    ZDB-ID 204287-3
    ISSN 1873-3581 ; 0040-4039
    ISSN (online) 1873-3581
    ISSN 0040-4039
    DOI 10.1016/j.tetlet.2016.07.078
    Datenquelle NAL Katalog (AGRICOLA)

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  7. Buch ; Online: Ports and Waterways

    van Koningsveld, Mark / Verheij, Henk / Taneja, Poonam / de Vriend, Huib

    Navigating the changing world

    2023  

    Schlagwörter Harbours & ports ; Maritime / nautical trades ; Hydraulic engineering ; system performance ; waterborne supply chains ; port development ; port planning ; container terminals ; waterway transport
    Sprache Englisch
    Umfang 1 electronic resource (517 pages)
    Verlag TU Delft Open
    Erscheinungsort Delft
    Dokumenttyp Buch ; Online
    Anmerkung English
    HBZ-ID HT030649901
    ISBN 9789463664448 ; 9463664440
    Datenquelle ZB MED Katalog Medizin, Gesundheit, Ernährung, Umwelt, Agrar

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  8. Artikel ; Online: Computational screening for new inhibitors of M. tuberculosis mycolyltransferases antigen 85 group of proteins as potential drug targets.

    Gahoi, Shachi / Mandal, Rahul Shubhra / Ivanisenko, Nikita / Shrivastava, Priyanka / Jain, Sriyans / Singh, Ashish Kumar / Raghunandanan, Muthukurrusi Varieth / Kanchan, Swarna / Taneja, Bhupesh / Mandal, Chhabinath / Ivanisenko, Vladimir A / Kumar, Anil / Kumar, Rita / Ramachandran, Srinivasan

    Journal of biomolecular structure & dynamics

    2013  Band 31, Heft 1, Seite(n) 30–43

    Abstract: The group of antigen 85 proteins of Mycobacterium tuberculosis is responsible for converting trehalose monomycolate to trehalose dimycolate, which contributes to cell wall stability. Here, we have used a serial enrichment approach to identify new ... ...

    Abstract The group of antigen 85 proteins of Mycobacterium tuberculosis is responsible for converting trehalose monomycolate to trehalose dimycolate, which contributes to cell wall stability. Here, we have used a serial enrichment approach to identify new potential inhibitors by searching the libraries of compounds using both 2D atom pair descriptors and binary fingerprints followed by molecular docking. Three different docking softwares AutoDock, GOLD, and LigandFit were used for docking calculations. In addition, we applied the criteria of selecting compounds with binding efficiency close to the starting known inhibitor and showing potential to form hydrogen bonds with the active site amino acid residues. The starting inhibitor was ethyl-3-phenoxybenzyl-butylphosphonate, which had IC(50) value of 2.0 μM in mycolyltransferase inhibition assay. Our search from more than 34 million compounds from public libraries yielded 49 compounds. Subsequently, selection was restricted to compounds conforming to the Lipinski rule of five and exhibiting hydrogen bonding to any of the amino acid residues in the active site pocket of all three proteins of antigen 85A, 85B, and 85C. Finally, we selected those ligands which were ranked top in the table with other known decoys in all the docking results. The compound NIH415032 from tuberculosis antimicrobial acquisition and coordinating facility was further examined using molecular dynamics simulations for 10 ns. These results showed that the binding is stable, although some of the hydrogen bond atom pairs varied through the course of simulation. The NIH415032 has antitubercular properties with IC(90) at 20 μg/ml (53.023 μM). These results will be helpful to the medicinal chemists for developing new antitubercular molecules for testing.
    Mesh-Begriff(e) Acyltransferases/chemistry ; Acyltransferases/metabolism ; Antigens, Bacterial/chemistry ; Antigens, Bacterial/metabolism ; Antitubercular Agents/chemistry ; Antitubercular Agents/metabolism ; Bacterial Proteins/chemistry ; Bacterial Proteins/metabolism ; Binding Sites ; Drug Design ; Hydrogen Bonding ; Ligands ; Molecular Docking Simulation ; Mycobacterium tuberculosis/enzymology
    Chemische Substanzen Antigens, Bacterial ; Antitubercular Agents ; Bacterial Proteins ; Ligands ; Acyltransferases (EC 2.3.-) ; antigen 85B, Mycobacterium tuberculosis (EC 2.3.1.-)
    Sprache Englisch
    Erscheinungsdatum 2013
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 49157-3
    ISSN 1538-0254 ; 0739-1102
    ISSN (online) 1538-0254
    ISSN 0739-1102
    DOI 10.1080/07391102.2012.691343
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  9. Artikel ; Online: Commentary: Renewed interest in off-axis retinoscopy and peripheral refraction for it's role in control of myopia progression.

    Taneja, Mukesh

    Indian journal of ophthalmology

    2022  Band 70, Heft 3, Seite(n) 781–782

    Mesh-Begriff(e) Humans ; Myopia/diagnosis ; Refraction, Ocular ; Retinoscopy ; Vision Tests
    Sprache Englisch
    Erscheinungsdatum 2022-03-10
    Erscheinungsland India
    Dokumenttyp Journal Article ; Comment
    ZDB-ID 187392-1
    ISSN 1998-3689 ; 0301-4738
    ISSN (online) 1998-3689
    ISSN 0301-4738
    DOI 10.4103/ijo.IJO_2842_21
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  10. Artikel ; Online: Commentary: Effect of dry eyes on the corneal diagnostic measurements.

    Taneja, Mukesh

    Indian journal of ophthalmology

    2022  Band 70, Heft 4, Seite(n) 1157–1158

    Mesh-Begriff(e) Corneal Topography ; Dry Eye Syndromes/diagnosis ; Humans
    Sprache Englisch
    Erscheinungsdatum 2022-03-24
    Erscheinungsland India
    Dokumenttyp Journal Article ; Comment
    ZDB-ID 187392-1
    ISSN 1998-3689 ; 0301-4738
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    DOI 10.4103/ijo.IJO_3119_21
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